CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42212	Canola	cytosol	57.56	48.24
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	50.42	48.1
CDY53991	Canola	cytosol	52.1	46.1
CDY32766	Canola	cytosol	52.1	43.13
CDY32876	Canola	cytosol, extracellular	51.47	42.61
AT5G56680.1	Thale cress	cytosol	50.42	41.96
CDX88584	Canola	cytosol	46.43	41.78
CDY11908	Canola	plastid	50.42	41.74
AT1G70980.1	Thale cress	cytosol	50.0	41.68
KRH41453	Soybean	cytosol, extracellular, nucleus	47.69	40.04
VIT_11s0016g02680.t01	Wine grape	cytosol	47.9	39.93
KRH60164	Soybean	endoplasmic reticulum	47.48	39.86
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	31.09	38.24
VIT_06s0004g07580.t01	Wine grape	cytosol	17.02	38.03
PGSC0003DMT400060831	Potato	cytosol, extracellular	46.22	37.93
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	46.01	37.76
Os01t0372700-01	Rice	plastid	44.33	37.75
VIT_12s0034g00320.t01	Wine grape	cytosol	23.74	37.67
EER95098	Sorghum	cytosol	43.28	36.72
EER90985	Sorghum	cytosol	43.28	36.72
TraesCS7D01G028100.1	Wheat	cytosol	39.08	36.69
Zm00001d009271_P003	Maize	cytosol	43.28	36.65
TraesCS7A01G031700.1	Wheat	cytosol	39.29	36.52
TraesCS1A01G102600.1	Wheat	golgi	42.86	36.04
HORVU1Hr1G021130.2	Barley	plastid	42.86	36.04
TraesCS1B01G113400.1	Wheat	cytosol	42.44	35.69
TraesCS1D01G094600.1	Wheat	cytosol	42.44	35.69
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	18.07	35.54
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	17.86	35.12
TraesCS2A01G584300.1	Wheat	cytosol	40.13	34.35
VIT_00s0120g00100.t01	Wine grape	cytosol	29.62	30.39
CDY58174	Canola	plastid	35.71	30.25
CDY50134	Canola	plastid	35.71	30.25
CDY42978	Canola	plastid	35.5	30.02
AT1G68420.1	Thale cress	cytosol	5.46	29.89
CDY35583	Canola	plastid	34.87	29.64
VIT_16s0013g00080.t01	Wine grape	cytosol	37.82	29.03
KRH38090	Soybean	cytosol	14.92	28.74
CDY35930	Canola	cytosol	33.19	24.92
CDY28051	Canola	cytosol	32.98	24.8
CDX74047	Canola	cytosol	32.35	24.72
CDY07998	Canola	cytosol	31.93	24.68
CDY08000	Canola	cytosol	7.77	23.87
CDX78190	Canola	cytosol	6.51	17.61
CDX73541	Canola	cytosol	7.14	16.27
CDY28248	Canola	cytosol	18.49	16.03
CDX68726	Canola	extracellular	18.49	16.03
CDY35247	Canola	cytosol	17.65	15.88
CDY13418	Canola	cytosol	17.44	15.04
CDY14727	Canola	cytosol	16.6	14.71
CDX72297	Canola	cytosol	17.02	14.62
CDY06845	Canola	nucleus	14.5	13.61

Protein Annotations

MapMan:17.2.3	Gene3D:3.30.930.10	GO:A0A078HK70	UniProt:A0A078HK70	EnsemblPlants:CDY38272	ProteinID:CDY38272
ProteinID:CDY38272.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00065630001	PFAM:PF00152	PANTHER:PTHR22594
PANTHER:PTHR22594:SF34	SUPFAM:SSF55681	UniParc:UPI0004EE5B26	InterPro:aa-tRNA-synt_II	:	:

Description

BnaA10g11200DBnaA10g11200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK70]

Coordinates

chrLK032420:+:160514..163037

Molecular Weight (calculated)

52822.9 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.220

Length

476 amino acids

Sequence
(BLAST)

001: MYIYDAISLN FLVGRGFFLS PALGNEAELT DQKVQSHGWV RTEEKGKETF SIIVANDGSS SSANLHVMLA ATVDNGCLKI PLQEVSSPKE GAFSSPTVEK
101: SRFSGHELVK SILCRPTEDP DSPGRKSASS GGLEPEAYLQ VIVDASLSDD LSKLIAKGTC VVVDGCLKLP PQGTKQKIEL KVEEVVSVGT VDQVTYPFPK
201: NKPSLEHLRK YLHIRARTNL IASVARIRNV LAFATHSFFQ SQSFLYVSTP IITTSDCEGA GGQGSNLADL KKDGETDYSQ DFFGRQAFLS VSGQLQLESY
301: ACALGILDDL KEDTDCAEAY VRYMCTWLLD NCYDDLEVMA KNVDEGCIDR LKLVASTWFV RVTYTEAIDL LKKAVAQRQT FENQVEWGIH LASGHERYLT
401: EVVFQKLVIV YNYPKGIKAF YMRVNDGRCH GCPRSKGDGF TSRTIRVIPG LETSWNRMDK IRDVIPFPRY PGRADL

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.