Factsheet for Os01t0372700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90985	Sorghum	cytosol	88.91	88.59
EER95098	Sorghum	cytosol	88.19	87.88
Zm00001d009271_P003	Maize	cytosol	88.19	87.72
TraesCS1A01G102600.1	Wheat	golgi	87.48	86.4
TraesCS1B01G113400.1	Wheat	cytosol	87.12	86.04
HORVU1Hr1G021130.2	Barley	plastid	87.12	86.04
TraesCS1D01G094600.1	Wheat	cytosol	86.76	85.69
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	51.7	74.68
VIT_11s0016g02680.t01	Wine grape	cytosol	76.21	74.61
TraesCS2A01G584300.1	Wheat	cytosol	73.17	73.56
TraesCS7D01G028100.1	Wheat	cytosol	66.55	73.37
CDX88584	Canola	cytosol	67.98	71.83
VIT_06s0004g07580.t01	Wine grape	cytosol	27.37	71.83
TraesCS7A01G031700.1	Wheat	cytosol	65.65	71.68
Bra006861.1-P	Field mustard	cytosol	71.02	71.53
KRH60164	Soybean	endoplasmic reticulum	72.45	71.43
VIT_12s0034g00320.t01	Wine grape	cytosol	38.1	71.0
KRH41453	Soybean	cytosol, extracellular, nucleus	71.91	70.9
PGSC0003DMT400060831	Potato	cytosol, extracellular	72.81	70.17
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	72.45	69.83
CDY11908	Canola	plastid	71.74	69.74
Bra002799.1-P	Field mustard	cytosol	70.84	68.87
CDY32766	Canola	cytosol	70.84	68.87
CDY32876	Canola	cytosol, extracellular	70.66	68.7
AT1G70980.1	Thale cress	cytosol	69.41	67.95
AT5G56680.1	Thale cress	cytosol	69.23	67.66
CDY42212	Canola	cytosol	67.44	66.37
CDY53991	Canola	cytosol	63.86	66.36
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	28.44	65.7
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	28.44	65.7
AT1G68420.1	Thale cress	cytosol	9.12	58.62
Os07t0485400-01	Rice	cytosol	21.29	54.34
KRH38090	Soybean	cytosol	22.72	51.42
VIT_00s0120g00100.t01	Wine grape	cytosol	42.4	51.08
Bra002754.1-P	Field mustard	cytosol	54.38	50.92
VIT_16s0013g00080.t01	Wine grape	cytosol	55.1	49.68
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	43.11	48.3
CDY38272	Canola	cytosol	37.75	44.33
Os12t0414500-01	Rice	plasma membrane	40.07	36.42
Os02t0686400-01	Rice	extracellular	20.57	20.95
Os02t0139600-01	Rice	cytosol	13.06	20.68

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	EntrezGene:4325717	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	ProteinID:BAB61140.1	ProteinID:BAB64053.1	ProteinID:BAF04980.1	ProteinID:BAS72186.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195
HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	EnsemblPlantsGene:Os01g0372700	EnsemblPlants:Os01t0372700-01	PFAM:PF00152
PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594
PANTHER:PTHR22594:SF36	UniProt:Q93WM3	InterPro:S15_NS1_RNA-bd	SUPFAM:SSF47060	SUPFAM:SSF50249	SUPFAM:SSF55681
TIGRFAMs:TIGR00457	UniParc:UPI00000A9548	InterPro:WHEP-TRS_dom	RefSeq:XP_015621402.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

Similar to Asparaginyl-tRNA synthetase, cytoplasmic 1 (EC 6.1.1.22) (Asparagine-- tRNA ligase 1) (AsnRS 1). (Os01t0372700-01)

Coordinates

chr1:-:15356785..15360682

Molecular Weight (calculated)

62591.7 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.309

Length

559 amino acids

Sequence
(BLAST)

001: MAEDAAAAAM AAASLSDDLE PATDRTRIRS ILADGAARAG ERVVVGGWVK TGREQGKGTF AFLELNDGSC ASNLQVLVDA AVHPLAPLTA TGTSVLVEGE
101: LKKPPEGAKQ RVELRVDRVI EVGEVDPAAY PLPKTKLTLE NLRDVVHLRS RTNTIGAVAR IRHQLACATH RFFDENGFLY VHTPIITTSD CEGAGEMFQV
201: TTLFSHAEKV EKELKENPAP SESDIEAARV VVKEKGDAVA QLKAAKASKQ EITAAVAELN KAKENVSRLE ERSKLKPGIP YRDDGTVAYE NDFFKRQAFL
301: TVSGQLQVET YACALSSVYT FGPTFRAENS HTSRHLAEFW MVEPEIAFAN LQDDMNCAER YVQYLCKWLL EHCREDMEFM VKNYDKTAIE RLELVSSTPF
401: QRISYTKAVE LLKNVTDKKF ENKVEWGIDL ASEHERYLTE VIFKKPVIVY NYPKEIKAFY MRLNDDQKTV AAMDVLVPKV GELVGGSQRE ERLDLLKTRI
501: QDAGLPLEPY EWYLDLRRFG SVKHSGFGLG FERMILFATG LENIRDVIPF PRYPGRADL

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.