CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95098	Sorghum	cytosol	98.4	98.4
Zm00001d009271_P003	Maize	cytosol	96.97	96.8
Os01t0372700-01	Rice	plastid	88.59	88.91
HORVU1Hr1G021130.2	Barley	plastid	84.14	83.39
TraesCS1A01G102600.1	Wheat	golgi	83.96	83.22
TraesCS1B01G113400.1	Wheat	cytosol	83.6	82.86
TraesCS1D01G094600.1	Wheat	cytosol	83.24	82.51
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	52.41	75.97
VIT_11s0016g02680.t01	Wine grape	cytosol	73.97	72.68
TraesCS2A01G584300.1	Wheat	cytosol	71.84	72.48
TraesCS7D01G028100.1	Wheat	cytosol	65.24	72.19
TraesCS7A01G031700.1	Wheat	cytosol	64.35	70.51
CDX88584	Canola	cytosol	65.95	69.94
Bra006861.1-P	Field mustard	cytosol	68.98	69.73
PGSC0003DMT400060831	Potato	cytosol, extracellular	71.84	69.48
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	71.48	69.14
VIT_06s0004g07580.t01	Wine grape	cytosol	26.2	69.01
KRH60164	Soybean	endoplasmic reticulum	69.52	68.78
VIT_12s0034g00320.t01	Wine grape	cytosol	36.72	68.67
KRH41453	Soybean	cytosol, extracellular, nucleus	69.34	68.61
CDY11908	Canola	plastid	69.34	67.65
CDY32766	Canola	cytosol	68.81	67.13
Bra002799.1-P	Field mustard	cytosol	68.81	67.13
CDY32876	Canola	cytosol, extracellular	68.45	66.78
AT5G56680.1	Thale cress	cytosol	67.38	66.08
AT1G70980.1	Thale cress	cytosol	67.02	65.85
CDY53991	Canola	cytosol	61.14	63.75
CDY42212	Canola	cytosol	64.53	63.73
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.27	63.22
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.27	63.22
AT1G68420.1	Thale cress	cytosol	8.91	57.47
Bra002754.1-P	Field mustard	cytosol	53.48	50.25
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	43.32	48.7
KXG36232	Sorghum	mitochondrion	47.59	48.37
VIT_00s0120g00100.t01	Wine grape	cytosol	39.93	48.28
VIT_16s0013g00080.t01	Wine grape	cytosol	53.3	48.23
KRH38090	Soybean	cytosol	21.03	47.77
CDY38272	Canola	cytosol	36.72	43.28
OQU84347	Sorghum	cytosol	21.03	23.74
KXG31524	Sorghum	cytosol	19.96	20.48

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	EntrezGene:8060003	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	UniProt:C5WN03	ncoils:Coil	EnsemblPlants:EER90985	ProteinID:EER90985	ProteinID:EER90985.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862
PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	EnsemblPlantsGene:SORBI_3001G113000	SUPFAM:SSF50249	SUPFAM:SSF55681
unigene:Sbi.7993	TIGRFAMs:TIGR00457	UniParc:UPI0001A824F3	InterPro:WHEP-TRS_dom	RefSeq:XP_002463987.1	InterPro:aa-tRNA-synt_II
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:8859848..8866786

Molecular Weight (calculated)

62524.8 Da

IEP (calculated)

5.911

GRAVY (calculated)

-0.241

Length

561 amino acids

Sequence
(BLAST)

001: MAADAAAAAM AAASLCDDLE PATARTRIRD VLAAGTARAG DRVVVGGWVR TGREQGKGSF AFLELSDGSC AATLQVIVDA AVHPLARLTA TGTSVLVEGD
101: IKEPPEGTKQ NVELKVSRVL EVGEVDAAVY PLPKGKVKLT LEKLRDVVHL RSRTNTIGAV ARIRHQLAYA SHTFFDENGF LYVHTPIITT SDCEGAGEMF
201: QVTTLFSQAE KTEKELRENP APSDSEIEAA KFLVKERGDA VAQLKAAKAS KQKISAAVDE LNRAKEIVSK LEERSKLKPG IPLRDDGSIA FENDFFKRQA
301: FLTVSGQLQV ETYACALSSV YTFGPTFRAE NSHTSRHLAE FWMVEPEIAF ANLQDDMNCA EKYVQYLCKW LLDHCREDME FMVKNYDKSA IERLELVSST
401: PFVRISYTKA VELLKNVTDK KFDNKVEWGI DLASEHERYL TEDIFKKPVI VYNYPKGIKA FYMRLNDDDK TVAAMDVLVP KVGELIGGSQ REERLDVLKQ
501: RILDAGLPLE PYEWYLDLRR FGSVKHSGFG LGFERMILFA TGMENIRDVI PFPRYPGRAD L

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.