Factsheet for Bra006861.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88584	Canola	cytosol	95.32	100.0
CDY11908	Canola	plastid	99.28	95.83
Bra002799.1-P	Field mustard	cytosol	92.79	89.57
AT5G56680.1	Thale cress	cytosol	82.52	80.07
AT1G70980.1	Thale cress	cytosol	81.44	79.16
VIT_11s0016g02680.t01	Wine grape	cytosol	77.66	75.48
VIT_06s0004g07580.t01	Wine grape	cytosol	28.29	73.71
KRH60164	Soybean	endoplasmic reticulum	74.59	73.02
KRH41453	Soybean	cytosol, extracellular, nucleus	73.87	72.31
Os01t0372700-01	Rice	plastid	71.53	71.02
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	49.37	70.8
VIT_12s0034g00320.t01	Wine grape	cytosol	38.02	70.33
HORVU1Hr1G021130.2	Barley	plastid	70.45	69.08
EER90985	Sorghum	cytosol	69.73	68.98
PGSC0003DMT400060831	Potato	cytosol, extracellular	72.07	68.97
TraesCS1A01G102600.1	Wheat	golgi	70.27	68.9
EER95098	Sorghum	cytosol	69.37	68.63
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	71.71	68.62
TraesCS1B01G113400.1	Wheat	cytosol	69.91	68.55
TraesCS1D01G094600.1	Wheat	cytosol	69.73	68.37
Zm00001d009271_P003	Maize	cytosol	68.65	67.79
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	29.19	66.94
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	29.01	66.53
AT1G68420.1	Thale cress	cytosol	10.27	65.52
TraesCS2A01G584300.1	Wheat	cytosol	63.24	63.13
TraesCS7D01G028100.1	Wheat	cytosol	56.58	61.93
TraesCS7A01G031700.1	Wheat	cytosol	56.94	61.72
Bra002754.1-P	Field mustard	cytosol	65.77	61.14
Bra021059.1-P	Field mustard	plastid	50.09	49.47
VIT_16s0013g00080.t01	Wine grape	cytosol	54.95	49.19
VIT_00s0120g00100.t01	Wine grape	cytosol	41.08	49.14
Bra026243.1-P	Field mustard	plastid	49.73	49.02
KRH38090	Soybean	cytosol	21.8	48.99
Bra001250.1-P	Field mustard	cytosol	40.9	36.44
Bra029647.1-P	Field mustard	cytosol	41.08	35.96
Bra011251.1-P	Field mustard	cytosol	22.7	22.95
Bra024018.1-P	Field mustard	cytosol	22.34	22.46
Bra007014.1-P	Field mustard	cytosol	5.95	18.75
Bra011081.1-P	Field mustard	cytosol	20.0	6.27

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb
EnsemblPlantsGene:Bra006861	EnsemblPlants:Bra006861.1	EnsemblPlants:Bra006861.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR000738	InterPro:IPR006195	UniProt:M4CRM0	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185
PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SMART:SM00991	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457
UniParc:UPI000253FD24	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

AT5G56680 (E=8e-248) SYNC1, EMB2755, SYNC1 ARATH | SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding

Coordinates

chrA03:-:5387736..5390172

Molecular Weight (calculated)

61868.3 Da

IEP (calculated)

5.483

GRAVY (calculated)

-0.241

Length

555 amino acids

Sequence
(BLAST)

001: MADEVTVQKA RFSDRVRIRS ILGRPDGGAG LAGQKVRISG WVKTGREQGK GAFAFLEVND GSCPANLQVM VDASVSDLSK LVATGTCVTV DGCLKIPPEG
101: KGTKQKVELS VVEVVDVGTV DTATYPIPKT KLTLERLREF PHLRSRTNSI SAIARIRHAL AIATHTFFDE EGFLYIQTPI ITTSDCEGAG EMFQVTTLIS
201: HTEKLERDLI ENPPPTEADV EAARLIVKAR GEAVAHLKSA KASKETITAS VAELNEAKAS LSRTEERSKL KPGLPKLDGK IDYTQDFFGR QAFLTVSGQL
301: QVETYACGLS DVYTFGPTFR AENSHTSRHL AEFWMVEPEL AFADLEDDMN CAEAYVRYMC KWLLEKRYDD MELMAKNFDK GCIDRLKLVA STPFGRLTYT
401: KAIELLEEAV GKGKEFVNPV EWGIDLASEH ERYLTEVVFQ KPLIVYNYPK GIKAFYMRLN DDGKTVAAMD VLVPKVGELI GGSQREERID VIMERIEEMG
501: LPVEPYEWYL DLRRYGTAKH SGFGLGFERM VLFATGMDNI RDVIPFPRYP GRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.