Factsheet for Bra029647.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015289.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07420.1	Bra015289.1-P	AT1G04100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28051	Canola	cytosol	96.37	96.52
CDY35930	Canola	cytosol	96.37	96.37
Bra001250.1-P	Field mustard	cytosol	79.34	80.74
AT3G07420.1	Thale cress	cytosol	81.23	80.72
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	13.72	60.0
VIT_00s2558g00010.t01	Wine grape	cytosol	24.92	58.52
PGSC0003DMT400056710	Potato	cytosol	50.63	52.88
Solyc09g057950.2.1	Tomato	cytosol	49.53	51.56
KRH07367	Soybean	cytosol	50.16	50.96
KRH66191	Soybean	plastid	50.79	50.39
GSMUA_AchrUn_...	Banana	cytosol	40.38	45.39
GSMUA_Achr8P31970_001	Banana	mitochondrion	34.23	42.72
Bra006861.1-P	Field mustard	cytosol	35.96	41.08
Bra002799.1-P	Field mustard	cytosol	37.22	41.04
Os12t0414500-01	Rice	plasma membrane	39.12	40.33
Bra021059.1-P	Field mustard	plastid	32.18	36.3
Bra026243.1-P	Field mustard	plastid	31.7	35.7
Bra002754.1-P	Field mustard	cytosol	29.02	30.82
Bra007014.1-P	Field mustard	cytosol	6.15	22.16
Bra011251.1-P	Field mustard	cytosol	16.4	18.94
Bra024018.1-P	Field mustard	cytosol	16.25	18.66
Bra011081.1-P	Field mustard	cytosol	15.14	5.42

Protein Annotations

MapMan:17.2.3	EnsemblPlantsGene:Bra029647	EnsemblPlants:Bra029647.1	EnsemblPlants:Bra029647.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:M4ELH9	PFAM:PF00152	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF55681	UniParc:UPI0002547EE7
InterPro:aa-tRNA-synt_II	SEG:seg	:	:	:	:

Description

AT3G07420 (E=2e-285) NS2, ATNS2, SYNC2_ARATH, SYNC2 | NS2; asparagine-tRNA ligase

Coordinates

chrA05:+:22806990..22809369

Molecular Weight (calculated)

70777.7 Da

IEP (calculated)

7.958

GRAVY (calculated)

-0.324

Length

634 amino acids

Sequence
(BLAST)

001: MDSHGKSHHE DASPNLIPLS KYSNRVELKT LLEQSDGGAG FLGKRVVVGG WVKSSRAVKK ESLPPPPPEV FAPPPSSGGS QASPTPSVSC TEIINSRMNI
101: FRKLFDVLSG GGKTYPIFEK QDLAGQKATS PPEYIIHFQI NDGSSISTLQ VIVDSVLSSV PATQLMSLGT CIVAEGVLRQ PLSASAKHVI ELEAEKLLHV
201: GTVDPDKYPL SKKQLPLHML RDHSHFRPRT TTVGSVTRVH SALTLASHTF LQNNGFQYVQ VPVITTTGAG EMFRLTTLLG EDDDKEEKKH VNEKDGVSID
301: TVKAAVKEKT RLIDHLKRTD SNREAVVAAV YDLKKTSDLA SQLEMKQRPK ASATLIKPEK VDFSKDFFGC EAYLTVSGRL HLESYASALG KVYTFGPRFI
401: ADKIDSTRHL AEMWNVETEI AFSELDDAMD CAAEFFKFLC KYLLENRHED MKFISKRVDK TITIRLEATA SSSILRFSYT EAISVLQKAT TRIFETKPEW
501: GVALTEEHLS YLTDEIYKGC VIIHSYPKEV KPFYTRLNDD KKTVAAFDLV VPKVGVVITG SQNEERFEIL NARIREDRLT TREKYEWYLD LRSHGTVKHS
601: GISLRMEHML LFATGLPDIK DTVPFPRSWG KANN

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.