Factsheet for Bra015289.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra003484.1-P
Bra007661.1-P
Bra009867.1-P
Bra010048.1-P
Bra012190.1-P
Bra014303.1-P
Bra014411.1-P
Bra015289.1-P
Bra015298.1-P
Bra016492.1-P
Bra018938.1-P
Bra018993.1-P
Bra020125.1-P
Bra021117.1-P
Bra021257.1-P
Bra022224.1-P
Bra024406.1-P
Bra025775.1-P
Bra026755.1-P
Bra026812.1-P
Bra027232.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035910.1-P
Bra036557.1-P
Bra037824.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04100.1	Bra015289.1-P	AT1G04100.1	21734647
AT1G04100.1	Bra015289.1-P	AT1G04100.1	21798944
AT1G04100.1	Bra015298.1-P	AT1G04250.1	21734647
AT1G04100.1	Bra030560.1-P	AT1G04250.1	21734647
AT1G04100.1	Bra032520.1-P	AT1G04250.1	21734647
AT1G04100.1	Bra026812.1-P	AT1G14687.1	21798944
AT1G04100.1	Bra026755.1-P	AT1G15580.1	21734647
AT1G04100.1	Bra012190.1-P	AT1G19850.1	21734647
AT1G04100.1	Bra016492.1-P	AT1G19850.1	21734647
AT1G04100.1	Bra025775.1-P	AT1G19850.1	21734647
AT1G04100.1	Bra014303.1-P	AT1G51950.1	21798944
AT1G04100.1	Bra018938.1-P	AT1G51950.1	21798944
AT1G04100.1	Bra018993.1-P	AT1G52830.1	21798944
AT1G04100.1	Bra001598.1-P	AT3G15540.1	21798944
AT1G04100.1	Bra021117.1-P	AT3G15540.1	21798944
AT1G04100.1	Bra027232.1-P	AT3G15540.1	21798944
AT1G04100.1	Bra001670.1-P	AT3G17600.1	21734647
AT1G04100.1	Bra021257.1-P	AT3G17600.1	21734647
AT1G04100.1	Bra022224.1-P	AT3G17600.1	21734647
AT1G04100.1	Bra001900.1-P	AT3G23050.1	21734647
AT1G04100.1	Bra033886.1-P	AT3G23050.1	21734647
AT1G04100.1	Bra001900.1-P	AT3G23050.1	21798944
AT1G04100.1	Bra033886.1-P	AT3G23050.1	21798944
AT1G04100.1	Bra003484.1-P	AT3G62100.1	21734647
AT1G04100.1	Bra007661.1-P	AT3G62100.1	21734647
AT1G04100.1	Bra014411.1-P	AT3G62100.1	21734647
AT1G04100.1	Bra002327.1-P	AT5G20730.1	21734647
AT1G04100.1	Bra020125.1-P	AT5G20730.1	21734647
AT1G04100.1	Bra009867.1-P	AT5G25890.1	21734647
AT1G04100.1	Bra036557.1-P	AT5G25890.1	21734647
AT1G04100.1	Bra010048.1-P	AT5G62000.1	21734647
AT1G04100.1	Bra035910.1-P	AT5G62000.1	21734647
AT1G04100.1	Bra024406.1-P	AT5G65670.1	21734647
AT1G04100.1	Bra037824.1-P	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89844	Canola	cytosol, nucleus, plastid	97.42	97.42
CDY18205	Canola	cytosol, nucleus, plastid	92.25	92.25
AT1G04100.1	Thale cress	cytosol	69.74	72.41
Bra011045.1-P	Field mustard	nucleus	42.07	46.91
Bra021257.1-P	Field mustard	cytosol	11.81	44.44
Bra015326.1-P	Field mustard	nucleus	34.69	40.0
Bra022934.1-P	Field mustard	nucleus	35.06	39.26
Bra022224.1-P	Field mustard	nucleus, plastid	22.14	37.97
Bra005508.1-P	Field mustard	nucleus	34.69	37.01
Bra003484.1-P	Field mustard	nucleus, plastid	22.14	34.88
Bra001670.1-P	Field mustard	nucleus	18.82	34.46
Bra040476.1-P	Field mustard	cytosol, plastid	21.4	33.33
Bra007661.1-P	Field mustard	plastid	21.4	32.77
Bra036557.1-P	Field mustard	nucleus	19.19	29.71
Bra014411.1-P	Field mustard	nucleus, plastid	13.65	29.37
Bra009867.1-P	Field mustard	cytosol	18.82	28.98
Bra032503.1-P	Field mustard	nucleus	32.84	28.71
Bra024187.1-P	Field mustard	plastid	40.59	27.64
Bra018938.1-P	Field mustard	nucleus	24.72	26.48
Bra021184.1-P	Field mustard	nucleus	25.83	26.02
Bra014303.1-P	Field mustard	nucleus	25.83	25.93
Bra001634.1-P	Field mustard	nucleus	24.72	24.63
Bra022164.1-P	Field mustard	nucleus	23.62	22.46
Bra011332.1-P	Field mustard	nucleus	18.45	21.64
Bra023958.1-P	Field mustard	nucleus	18.82	20.99

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra015289	EnsemblPlants:Bra015289.1
EnsemblPlants:Bra015289.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	GO:GO:0010200	InterPro:IPR000270	UniProt:M4DFL6	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF48	SUPFAM:SSF54277	UniParc:UPI0002544272	SEG:seg

Description

AT1G04100 (E=2e-064) IAA10 | IAA10; transcription factor

Coordinates

chrA10:-:2683313..2684531

Molecular Weight (calculated)

28829.8 Da

IEP (calculated)

5.187

GRAVY (calculated)

-0.300

Length

271 amino acids

Sequence
(BLAST)

001: MSGFRDGCSS SGSVNVMIGV SSPAEEGEDD NAAAVALSSE DSCSPDETVA GTEIDLALGL SIGLNRSRNH SSKVRSFSSS LASSSSSSLT KESGTKRSAD
101: SSAAASKGQV AVGWPPLRTY RINSLVNQAK SVPTEDDIQK DTTTTTTKNS VVAAVKNDEV GFIKSPMLVK VTMDGVIIGR KIDLNALDSY EALAKTLEQM
201: FFHTPSSVTT TRCKETTRAS ELLDGSSEYI ITYQDKDGDW MLVGDVPWLM FLGCVKRLRI MRRSGETGGG K

Best Arabidopsis Sequence Match ( AT1G04100.1 )
(BLAST)

001: MNGLQEVCSS SGSVMIGLPA EEDENAAHSS EDSSCPDESV SETELDLALG LSIGRRKVRS SLSSSSSSLT RESGTKRSAD SSPAAASNAT RQVAVGWPPL
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K

Arabidopsis Description

IAA10Auxin-responsive protein IAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q38828]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.