Factsheet for Bra015326.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89814	Canola	nucleus	100.0	100.0
AT1G04550.2	Thale cress	cytosol	83.4	82.01
Bra022934.1-P	Field mustard	nucleus	72.77	70.66
Bra005508.1-P	Field mustard	nucleus	73.19	67.72
Bra032503.1-P	Field mustard	nucleus	78.3	59.35
PGSC0003DMT400003784	Potato	nucleus	52.77	45.76
PGSC0003DMT400075427	Potato	nucleus	45.11	45.69
Solyc12g096980.1.1	Tomato	nucleus	45.11	45.49
Solyc09g090910.1.1	Tomato	nucleus	53.19	44.33
VIT_05s0049g01970.t01	Wine grape	nucleus	60.0	43.93
Bra021257.1-P	Field mustard	cytosol	12.77	41.67
Bra011045.1-P	Field mustard	nucleus	41.7	40.33
Bra036557.1-P	Field mustard	nucleus	25.96	34.86
Bra015289.1-P	Field mustard	nucleus	40.0	34.69
Bra009867.1-P	Field mustard	cytosol	25.53	34.09
Bra001670.1-P	Field mustard	nucleus	20.43	32.43
Bra022224.1-P	Field mustard	nucleus, plastid	21.28	31.65
Bra018938.1-P	Field mustard	nucleus	34.04	31.62
Bra003484.1-P	Field mustard	nucleus, plastid	22.98	31.4
Bra040476.1-P	Field mustard	cytosol, plastid	22.98	31.03
Bra014303.1-P	Field mustard	nucleus	34.89	30.37
Bra007661.1-P	Field mustard	plastid	22.55	29.94
Bra021184.1-P	Field mustard	nucleus	31.06	27.14
Bra014411.1-P	Field mustard	nucleus, plastid	14.47	26.98
Bra001634.1-P	Field mustard	nucleus	30.64	26.47
Bra024187.1-P	Field mustard	plastid	43.83	25.88
Bra022164.1-P	Field mustard	nucleus	29.79	24.56
Bra011332.1-P	Field mustard	nucleus	22.98	23.38
Bra023958.1-P	Field mustard	nucleus	22.55	21.81

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra015326	EnsemblPlants:Bra015326.1
EnsemblPlants:Bra015326.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	UniProt:M4DFQ3	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI0002543EA0	SEG:seg

Description

AT1G04550 (E=1e-084) IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor

Coordinates

chrA10:-:2463761..2464921

Molecular Weight (calculated)

25866.5 Da

IEP (calculated)

7.836

GRAVY (calculated)

-0.783

Length

235 amino acids

Sequence
(BLAST)

001: MRGGGSEFET GKSNLLPAES ELELGLGLSI GGGAWRERGR ILTAKDFPSV GSKRAADQSS SHQGQGASPP RSSQIVGWPP IGSHRMNKVN NQAPMKAAKE
101: EEEEEEGKKK NDETKDVSVQ GLGYVKVNMD GVGIGRKVDI RAHSSYENLA QTLEEMFFGM SGSTTSREKV KPLRLLDGSS EFVLTYEDKD GDWMLVGDVP
201: WRMFVTSVKR LRIMGTSEAN GLAPRHQEQK ERQRQ

Best Arabidopsis Sequence Match ( AT1G04550.2 )
(BLAST)

001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV

Arabidopsis Description

IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.