Factsheet for VIT_05s0049g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003784	Potato	nucleus	56.39	66.79
Solyc09g090910.1.1	Tomato	nucleus	56.7	64.54
CDY19477	Canola	nucleus	45.48	62.13
CDY17158	Canola	nucleus	45.48	61.86
Bra022934.1-P	Field mustard	nucleus	46.42	61.57
CDX84693	Canola	nucleus	46.42	61.57
AT2G33310.2	Thale cress	nucleus	47.04	61.13
CDX79522	Canola	nucleus	46.42	60.57
AT1G04550.2	Thale cress	cytosol	44.86	60.25
CDX89814	Canola	nucleus	43.93	60.0
Bra015326.1-P	Field mustard	nucleus	43.93	60.0
PGSC0003DMT400075427	Potato	nucleus	42.99	59.48
Solyc12g096980.1.1	Tomato	nucleus	42.99	59.23
VIT_07s0005g04380.t01	Wine grape	nucleus	56.39	59.15
CDY18243	Canola	nucleus	42.37	58.87
CDY59182	Canola	nucleus	41.12	58.67
Bra005508.1-P	Field mustard	nucleus	46.11	58.27
CDY53196	Canola	nucleus	40.81	57.71
VIT_07s0005g02550.t01	Wine grape	plastid	23.05	42.29
Bra032503.1-P	Field mustard	nucleus	40.5	41.94
VIT_05s0020g01070.t01	Wine grape	plastid	20.25	32.83
VIT_11s0016g05640.t01	Wine grape	cytosol	15.89	27.72
VIT_04s0008g05560.t01	Wine grape	extracellular	17.76	25.11
VIT_04s0008g00220.t01	Wine grape	nucleus	26.17	24.35
VIT_09s0002g03410.t01	Wine grape	nucleus	28.04	20.5

Protein Annotations

EntrezGene:100256286	wikigene:100256286	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CCB48626	ProteinID:CCB48626.1	UniProt:F6H8S7	EMBL:FN595496	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100256286
wikigene:LOC100256286	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6
SUPFAM:SSF54277	TIGR:TC60365	UniParc:UPI0002109029	ArrayExpress:VIT_05s0049g01970	EnsemblPlantsGene:VIT_05s0049g01970	EnsemblPlants:VIT_05s0049g01970.t01
unigene:Vvi.13701	RefSeq:XP_002285481	RefSeq:XP_002285481.1	RefSeq:XP_002285483	RefSeq:XP_002285483.2	SEG:seg

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6H8S7]

Coordinates

chr5:+:9458733..9461668

Molecular Weight (calculated)

33853.7 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.507

Length

321 amino acids

Sequence
(BLAST)

001: MDSGLSSLGG GSGGGGCGGG SSTNESVTTV SKVEVVEQMS TEASSYPGEA ELELGLGLSL GTGGGGGGGL VKPKQPSSAW GEYGRILTAK DFPSVLSNAS
101: STAPRFSNSS AGPVSGTKRA ADSAVSQEVG SATAASQVVG WPPIRAYRMN SLVNQAKALA AEDDKADSEN DKFKDTLKKK PYTGSNKNNS TVKEKGHLGF
201: VKVNMDGLPI GRKVDLDAHA CYGTLAQTLE DMFFRHNTTM PPIRSDVEKG QSTNPSKLLD GSSEFVLTYE DKEGDWMLVG DVPWGMFLST VKRLRIMRTS
301: EANGLAPRFQ ERSERQRSKP I

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.