Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17158 | Canola | nucleus | 99.15 | 98.73 |
| Bra005508.1-P | Field mustard | nucleus | 99.15 | 91.73 |
| AT2G33310.2 | Thale cress | nucleus | 94.89 | 90.28 |
| CDX79522 | Canola | nucleus | 92.34 | 88.21 |
| CDX84693 | Canola | nucleus | 90.64 | 88.02 |
| CDY59182 | Canola | nucleus | 71.06 | 74.22 |
| CDY53196 | Canola | nucleus | 70.64 | 73.13 |
| CDX89814 | Canola | nucleus | 72.77 | 72.77 |
| CDY18243 | Canola | nucleus | 71.06 | 72.29 |
| PGSC0003DMT400003784 | Potato | nucleus | 57.87 | 50.18 |
| CDY51701 | Canola | nucleus | 42.13 | 49.25 |
| Solyc09g090910.1.1 | Tomato | nucleus | 57.45 | 47.87 |
| PGSC0003DMT400075427 | Potato | nucleus | 46.81 | 47.41 |
| Solyc12g096980.1.1 | Tomato | nucleus | 46.38 | 46.78 |
| VIT_05s0049g01970.t01 | Wine grape | nucleus | 62.13 | 45.48 |
| CDY38374 | Canola | nucleus | 44.68 | 44.12 |
| CDY35203 | Canola | nucleus | 44.68 | 43.21 |
| CDY46895 | Canola | cytosol | 12.34 | 40.28 |
| CDX87072 | Canola | cytosol | 27.66 | 37.14 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 25.96 | 35.06 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 25.53 | 34.48 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 39.15 | 33.95 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 38.72 | 33.58 |
| CDX95843 | Canola | plastid | 22.13 | 33.55 |
| CDY71609 | Canola | nucleus, plastid | 21.7 | 32.48 |
| CDY22876 | Canola | nucleus | 34.89 | 32.41 |
| CDX87863 | Canola | nucleus | 34.89 | 32.28 |
| CDY33844 | Canola | nucleus | 34.47 | 32.02 |
| CDX82361 | Canola | cytosol, plastid | 21.28 | 31.85 |
| CDY19790 | Canola | cytosol | 26.38 | 31.79 |
| CDX92140 | Canola | nucleus, plastid | 21.28 | 31.65 |
| CDY46538 | Canola | nucleus | 35.32 | 30.74 |
| CDY25089 | Canola | plastid | 22.55 | 30.64 |
| CDY53439 | Canola | nucleus | 35.32 | 30.4 |
| CDX67874 | Canola | plastid | 22.13 | 30.06 |
| CDY27511 | Canola | cytosol, plastid | 22.13 | 29.89 |
| CDY48005 | Canola | cytosol, plastid | 22.13 | 29.89 |
| CDY64626 | Canola | cytosol | 33.62 | 29.37 |
| CDY58757 | Canola | plastid | 21.28 | 29.07 |
| CDY34957 | Canola | nucleus | 33.19 | 29.0 |
| CDY11402 | Canola | plastid | 21.7 | 28.81 |
| CDY43104 | Canola | nucleus | 32.34 | 28.46 |
| CDX75884 | Canola | cytosol | 32.34 | 28.04 |
| CDX82399 | Canola | nucleus | 32.34 | 27.94 |
| CDX92888 | Canola | nucleus | 45.96 | 26.67 |
| CDX92077 | Canola | nucleus | 32.34 | 26.67 |
| CDX75231 | Canola | nucleus | 22.98 | 23.38 |
| CDX68829 | Canola | nucleus | 22.55 | 23.25 |
| CDY46058 | Canola | plastid | 16.17 | 22.75 |
| CDY13478 | Canola | nucleus | 22.55 | 21.81 |
| CDX72351 | Canola | nucleus | 22.55 | 21.46 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078G3A6 | UniProt:A0A078G3A6 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY19477 | ProteinID:CDY19477 | ProteinID:CDY19477.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00009067001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 | UniParc:UPI0004EB2B41 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g11220DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3A6]
Coordinates
chrLK032096:-:506587..508196
Molecular Weight (calculated)
25382.3 Da
IEP (calculated)
9.900
GRAVY (calculated)
-0.556
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MISELEMGKA ESELELGLGL SLGGGTAAKI GKPGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGASP PRSSQVVGWP PIGSHRMNSL AAKSAREEEE
101: AGKKKVKDDE PKDVNKKVQV GFIKVNMDGV AIGRKVDLNA HSSYENLAQT LEDMFFRGNP GTIGLTGQFT KPLRLLDGSS EFVLTYEDKE GDWMLVGDVP
201: WRMFITSVKR LRVMKTSEAN GLAARHQESN ERQRK
101: AGKKKVKDDE PKDVNKKVQV GFIKVNMDGV AIGRKVDLNA HSSYENLAQT LEDMFFRGNP GTIGLTGQFT KPLRLLDGSS EFVLTYEDKE GDWMLVGDVP
201: WRMFITSVKR LRVMKTSEAN GLAARHQESN ERQRK
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.