Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011332.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX68829 | Canola | nucleus | 86.58 | 87.72 |
| CDY13478 | Canola | nucleus | 80.95 | 76.95 |
| CDX72351 | Canola | nucleus | 79.22 | 74.09 |
| AT4G32280.1 | Thale cress | cytosol | 70.56 | 64.94 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 17.75 | 45.05 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 16.02 | 36.27 |
| PGSC0003DMT400035770 | Potato | cytosol | 33.33 | 35.16 |
| KRH61758 | Soybean | nucleus | 34.2 | 34.96 |
| CDY46895 | Canola | cytosol | 10.82 | 34.72 |
| KRH52428 | Soybean | nucleus | 32.9 | 33.48 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 11.69 | 32.93 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 16.88 | 32.77 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 32.03 | 32.6 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 33.33 | 31.82 |
| Solyc08g021820.2.1 | Tomato | nucleus | 31.17 | 31.72 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 19.48 | 31.03 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 19.91 | 30.67 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 22.51 | 30.23 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 22.51 | 29.71 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 22.08 | 29.31 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 22.08 | 28.81 |
| CDX95843 | Canola | plastid | 19.05 | 28.39 |
| CDY71609 | Canola | nucleus, plastid | 19.05 | 28.03 |
| Os02t0805100-01 | Rice | nucleus | 22.08 | 28.02 |
| KXG19391 | Sorghum | nucleus | 24.68 | 27.94 |
| CDX92140 | Canola | nucleus, plastid | 19.05 | 27.85 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 19.05 | 27.5 |
| CDX82361 | Canola | cytosol, plastid | 18.61 | 27.39 |
| Os06t0166500-01 | Rice | nucleus | 21.64 | 27.32 |
| KXG31308 | Sorghum | cytosol | 22.94 | 26.9 |
| CDX67874 | Canola | plastid | 19.91 | 26.59 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 18.18 | 26.58 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 19.48 | 26.16 |
| CDY25089 | Canola | plastid | 19.48 | 26.01 |
| Zm00001d045203_P001 | Maize | cytosol | 24.24 | 25.93 |
| Zm00001d000288_P001 | Maize | cytosol | 22.08 | 25.89 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 18.61 | 25.6 |
| CDY58757 | Canola | plastid | 19.05 | 25.58 |
| Zm00001d018414_P001 | Maize | nucleus | 22.51 | 25.24 |
| CDY51701 | Canola | nucleus | 21.64 | 24.88 |
| CDY11402 | Canola | plastid | 19.05 | 24.86 |
| CDY27511 | Canola | cytosol, plastid | 18.61 | 24.71 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 18.61 | 24.29 |
| CDY48005 | Canola | cytosol, plastid | 18.18 | 24.14 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 17.75 | 23.56 |
| CDX87072 | Canola | cytosol | 17.75 | 23.43 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 17.32 | 22.99 |
| CDX89814 | Canola | nucleus | 23.38 | 22.98 |
| CDY19477 | Canola | nucleus | 23.38 | 22.98 |
| CDY18243 | Canola | nucleus | 22.94 | 22.94 |
| CDY53196 | Canola | nucleus | 22.51 | 22.91 |
| CDY17158 | Canola | nucleus | 23.38 | 22.88 |
| CDY59182 | Canola | nucleus | 22.08 | 22.67 |
| CDY35203 | Canola | nucleus | 23.81 | 22.63 |
| CDX84693 | Canola | nucleus | 23.38 | 22.31 |
| CDY38374 | Canola | nucleus | 22.94 | 22.27 |
| CDX79522 | Canola | nucleus | 23.38 | 21.95 |
| CDY19790 | Canola | cytosol | 17.32 | 20.51 |
| CDY46058 | Canola | plastid | 14.29 | 19.76 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 22.51 | 19.19 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 22.08 | 18.82 |
| CDX82399 | Canola | nucleus | 22.08 | 18.75 |
| CDX75884 | Canola | cytosol | 21.21 | 18.08 |
| CDY34957 | Canola | nucleus | 20.78 | 17.84 |
| CDY22876 | Canola | nucleus | 19.48 | 17.79 |
| CDX87863 | Canola | nucleus | 19.48 | 17.72 |
| CDY43104 | Canola | nucleus | 20.35 | 17.6 |
| CDY33844 | Canola | nucleus | 19.05 | 17.39 |
| CDY64626 | Canola | cytosol | 19.91 | 17.1 |
| CDY46538 | Canola | nucleus | 19.48 | 16.67 |
| CDX92077 | Canola | nucleus | 20.35 | 16.49 |
| CDY53439 | Canola | nucleus | 19.48 | 16.48 |
| CDX92888 | Canola | nucleus | 24.68 | 14.07 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078CDP1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX75231 |
| ProteinID:CDX75231 | ProteinID:CDX75231.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00121086001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 | UniParc:UPI0002546615 | : | : |
Description
BnaA01g04710D
Coordinates
chrLK031804:+:215126..216380
Molecular Weight (calculated)
26703.5 Da
IEP (calculated)
6.307
GRAVY (calculated)
-0.673
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDLDLSLS PHTNSSNFGL GFDLNKHLNT KEKSFDAMLG LENMEEDCYV SKPRSFSLNG QSDKEDDDPL EPDSSVVYDE EENCKVVGWP PIKSCMKKYL
101: NYRHRSRNHP YHHHGRRINI SNQPATIERG GPLTSLRSSM YVKVKMDGVA ITRKVDIKLF NSYESLTNSL ITMFSQYQDC DREDTNFKFT FQGKEGDWLL
201: PGDVPWKIFA ESVHRISITR DCLCPYTRLL F
101: NYRHRSRNHP YHHHGRRINI SNQPATIERG GPLTSLRSSM YVKVKMDGVA ITRKVDIKLF NSYESLTNSL ITMFSQYQDC DREDTNFKFT FQGKEGDWLL
201: PGDVPWKIFA ESVHRISITR DCLCPYTRLL F
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.