CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68566
CDX75834
CDX82428
CDX87863
CDX89832
CDX92437
CDX92973
CDY02098
CDY06836
CDY10068
CDY10349
CDY10694
CDY15493
CDY16560
CDY18214
CDY20135
CDY21845
CDY22876
CDY23023
CDY26042
CDY30608
CDY30781
CDY32537
CDY33844
CDY36883
CDY45069
CDY46538
CDY53439
CDY53735
CDY53800
CDY57355
CDY63072
CDY63910
CDY68807
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20730.1	CDX89832	AT1G04250.1	21734647
AT5G20730.1	CDY10068	AT1G04250.1	21734647
AT5G20730.1	CDY15493	AT1G04250.1	21734647
AT5G20730.1	CDY18214	AT1G04250.1	21734647
AT5G20730.1	CDY32537	AT1G04250.1	21734647
AT5G20730.1	CDY63072	AT1G04250.1	21734647
AT5G20730.1	CDX87863	AT1G51950.1	18505759
AT5G20730.1	CDY22876	AT1G51950.1	18505759
AT5G20730.1	CDY33844	AT1G51950.1	18505759
AT5G20730.1	CDY46538	AT1G51950.1	18505759
AT5G20730.1	CDY53439	AT1G51950.1	18505759
AT5G20730.1	CDY26042	AT1G52830.1	14729917
AT5G20730.1	CDY53800	AT1G52830.1	14729917
AT5G20730.1	CDY68807	AT1G52830.1	14729917
AT5G20730.1	CDX75834	AT3G15540.1	14729917
AT5G20730.1	CDX82428	AT3G15540.1	14729917
AT5G20730.1	CDY20135	AT3G15540.1	14729917
AT5G20730.1	CDY21845	AT3G15540.1	14729917
AT5G20730.1	CDY71748	AT3G15540.1	14729917
AT5G20730.1	CDX75834	AT3G15540.1	21734647
AT5G20730.1	CDX82428	AT3G15540.1	21734647
AT5G20730.1	CDY20135	AT3G15540.1	21734647
AT5G20730.1	CDY21845	AT3G15540.1	21734647
AT5G20730.1	CDY71748	AT3G15540.1	21734647
AT5G20730.1	CDX92973	AT3G23050.1	21734647
AT5G20730.1	CDY10349	AT3G23050.1	21734647
AT5G20730.1	CDY10694	AT3G23050.1	21734647
AT5G20730.1	CDY30781	AT3G23050.1	21734647
AT5G20730.1	CDY63910	AT3G23050.1	21734647
AT5G20730.1	CDX68566	AT3G50060.1	17675404
AT5G20730.1	CDY02098	AT3G50060.1	17675404
AT5G20730.1	CDY23023	AT3G50060.1	17675404
AT5G20730.1	CDY30608	AT3G50060.1	17675404
AT5G20730.1	CDY57355	AT3G50060.1	17675404
AT5G20730.1	CDY36883	AT4G14560.1	14729917
AT5G20730.1	CDY53735	AT4G14560.1	14729917
AT5G20730.1	CDY36883	AT4G14560.1	21734647
AT5G20730.1	CDY53735	AT4G14560.1	21734647
AT5G20730.1	CDY36883	AT4G14560.1	9342315
AT5G20730.1	CDY53735	AT4G14560.1	9342315
AT5G20730.1	CDY06836	AT4G29080.1	21734647
AT5G20730.1	CDX92437	AT5G20730.1	14729917
AT5G20730.1	CDY16560	AT5G20730.1	14729917
AT5G20730.1	CDY45069	AT5G20730.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92437	Canola	nucleus	78.41	78.56
CDY45069	Canola	nucleus	73.9	69.18
AT5G20730.1	Thale cress	nucleus	76.97	68.84
Bra002327.1-P	Field mustard	nucleus	80.23	58.1
GSMUA_Achr3P10240_001	Banana	nucleus	33.11	55.65
CDX83778	Canola	nucleus	53.26	54.41
CDX96672	Canola	nucleus	53.17	54.31
CDY26690	Canola	nucleus	54.51	54.15
GSMUA_Achr9P18170_001	Banana	nucleus	44.24	53.98
KRH37536	Soybean	nucleus	58.25	53.96
CDY41030	Canola	nucleus	54.61	53.78
KRH12587	Soybean	nucleus	57.49	53.39
VIT_11s0016g00640.t01	Wine grape	nucleus	58.06	52.38
KRH19355	Soybean	nucleus	56.81	52.34
KRH02575	Soybean	nucleus	56.91	52.2
Solyc07g042260.2.1	Tomato	nucleus	54.7	50.13
PGSC0003DMT400006151	Potato	nucleus	54.99	49.52
Os06t0196700-02	Rice	nucleus	46.74	46.16
TraesCS7D01G161900.1	Wheat	nucleus	46.55	45.54
TraesCS7A01G160800.1	Wheat	nucleus	46.55	45.5
KXG19536	Sorghum	nucleus	45.87	45.39
Zm00001d045026_P002	Maize	nucleus	45.59	45.11
TraesCS7B01G065800.2	Wheat	plastid	46.07	44.4
HORVU7Hr1G033820.5	Barley	nucleus	45.2	44.18
CDY12048	Canola	nucleus	34.84	42.86
CDX90245	Canola	nucleus	35.03	42.84
CDY02285	Canola	nucleus	35.8	42.73
CDY09598	Canola	nucleus	35.41	42.41
CDY07460	Canola	nucleus	31.77	42.38
CDY39274	Canola	nucleus	31.48	42.11
CDY53537	Canola	nucleus	32.53	41.65
CDX74594	Canola	nucleus	32.44	41.27
CDY62586	Canola	nucleus	32.53	40.07
CDX83741	Canola	nucleus	32.34	39.83
CDY61164	Canola	nucleus	32.53	39.37
CDY01393	Canola	nucleus	32.53	39.19
CDY29392	Canola	nucleus	32.92	39.16
CDY39348	Canola	nucleus	32.44	38.45
CDY27291	Canola	nucleus	22.74	38.29
CDY47607	Canola	nucleus	21.79	37.58
CDX80025	Canola	nucleus	20.92	37.33
CDX95705	Canola	nucleus	19.48	37.25
CDY03502	Canola	nucleus	21.11	36.67
CDY10978	Canola	nucleus	21.98	36.64
CDY50434	Canola	nucleus	21.79	36.32
CDY33603	Canola	nucleus	22.84	36.01
CDY65065	Canola	nucleus	22.74	35.85
CDY67714	Canola	nucleus	18.14	35.59
CDY69758	Canola	nucleus	14.01	35.1
CDY21993	Canola	nucleus	17.66	33.76
CDY48583	Canola	nucleus	17.47	33.27
CDY31545	Canola	nucleus	22.84	31.44
CDY41720	Canola	nucleus	16.51	31.27
CDX80168	Canola	nucleus	22.55	30.96
CDX86939	Canola	nucleus	25.14	30.82
CDX94748	Canola	endoplasmic reticulum, vacuole	10.94	30.81
CDY53570	Canola	nucleus	14.78	30.74
CDY00245	Canola	nucleus	25.05	30.67
CDX87230	Canola	nucleus	23.99	30.19
CDY36940	Canola	nucleus	15.83	29.78
CDY67247	Canola	nucleus	24.28	29.73
CDY49005	Canola	nucleus	15.74	29.44
CDX94777	Canola	nucleus	15.64	29.26
CDY24168	Canola	nucleus	15.64	28.95
CDY16798	Canola	nucleus	24.09	28.62
CDY54111	Canola	nucleus	15.45	28.4
CDY55738	Canola	nucleus	13.92	26.85
CDX94484	Canola	nucleus	14.4	23.96
CDX94528	Canola	nucleus	14.2	22.12
CDY24162	Canola	nucleus	12.09	19.38

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078FQ45	UniProt:A0A078FQ45
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY16560	ProteinID:CDY16560	ProteinID:CDY16560.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00094351001	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0004EE258D	SEG:seg	:	:	:

Description

BnaC09g37130DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FQ45]

Coordinates

chrLK032065:-:194504..200034

Molecular Weight (calculated)

110818.0 Da

IEP (calculated)

6.050

GRAVY (calculated)

-0.238

Length

1042 amino acids

Sequence
(BLAST)

0001: MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFVRDGKGH LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN
0401: GLEMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDPSN NAPVTSAANY VVSTTAAAAV VALLFEPSAT AITASATTTI
0501: ASASASASAA ATTTTITASA ATTTITAASA AATTIAAATP STTASATPST TATATDSAAA ATTTAAVKNA ATAISYAPTQ FQLPQNQLYN GHQATQQHQA
0601: QQTSMHHLQP QVVSGSIASS VIAPPRTVFT TNGTAAASWS CPGTQSATAE NSTVTGSTNI PAESLGTTAF TVSAVAEVTT AATTTAAISF SRKLEFAFSV
0701: TPPTAAKPAV SAATFSLSRG AKAYSGITDG GDAPSSSTSP STNNCQISSS TFLNRSQSGP AILIPDPAVD VSGSLVQDLY SKSDMRLKHE LVSQQKPKAS
0801: LTDHQLEAQQ NFLSPNFGLD GDSRNSLFGG GGNVENGFVP ETLLSRGYDS QKDLQNMLSN YGGVTNDIGT EMSTSAVRTQ SFGIPNVPAI SNDLAVNDAG
0901: VLGGGLWPTQ TQRMRTYTKV QKRGSVGRSI DVNRYRGYDE LRHDLARMFG IEGQLEDPLT SDWKLVYVDH ENDILLVGDD PWEEFVNCVQ SIKILSSAEV
1001: PQLSLDGNFA GLPATNQACS GGDNGNGWRG QYDDNSATSF NR

Best Arabidopsis Sequence Match ( AT5G20730.2 )
(BLAST)

0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR

Arabidopsis Description

NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.