CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90334
KRG90903
KRG92429
KRG92430
KRG96613
KRH00001
KRH02575
KRH05621
KRH09813
KRH09948
KRH12587
KRH15420
KRH19355
KRH23388
KRH23504
KRH33583
KRH33660
KRH34375
KRH34377
KRH35895
KRH37536
KRH39325
KRH41538
KRH44271
KRH44390
KRH47203
KRH47514
KRH49135
KRH60250
KRH61351
KRH65922
KRH68346
KRH69048
KRH69143
KRH74730
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19220.1	KRG92429	AT1G04250.1	21734647
AT1G19220.1	KRH34377	AT1G04250.1	21734647
AT1G19220.1	KRG90903	AT1G15050.1	21734647
AT1G19220.1	KRH35895	AT1G15050.1	21734647
AT1G19220.1	KRH00001	AT1G35240.1	21734647
AT1G19220.1	KRH49135	AT1G35240.1	21734647
AT1G19220.1	KRH65922	AT1G35240.1	21734647
AT1G19220.1	KRH75716	AT1G35240.1	21734647
AT1G19220.1	KRH09948	AT1G51950.1	18505759
AT1G19220.1	KRH23388	AT1G51950.1	18505759
AT1G19220.1	KRH44271	AT1G51950.1	18505759
AT1G19220.1	KRH47203	AT1G51950.1	18505759
AT1G19220.1	KRG96613	AT2G46990.1	21734647
AT1G19220.1	KRH33660	AT2G46990.1	21734647
AT1G19220.1	KRH68346	AT2G46990.1	21734647
AT1G19220.1	KRH69143	AT2G46990.1	21734647
AT1G19220.1	KRG92429	AT3G23050.1	21734647
AT1G19220.1	KRH34377	AT3G23050.1	21734647
AT1G19220.1	KRG92430	AT4G14560.1	21734647
AT1G19220.1	KRH34375	AT4G14560.1	21734647
AT1G19220.1	KRH69048	AT4G14560.1	21734647
AT1G19220.1	KRG92430	AT4G14560.1	9342315
AT1G19220.1	KRH34375	AT4G14560.1	9342315
AT1G19220.1	KRH69048	AT4G14560.1	9342315
AT1G19220.1	KRG90334	AT5G57420.1	21734647
AT1G19220.1	KRH33583	AT5G57420.1	21734647
AT5G20730.1	KRG92429	AT1G04250.1	21734647
AT5G20730.1	KRH34377	AT1G04250.1	21734647
AT5G20730.1	KRH09948	AT1G51950.1	18505759
AT5G20730.1	KRH23388	AT1G51950.1	18505759
AT5G20730.1	KRH44271	AT1G51950.1	18505759
AT5G20730.1	KRH47203	AT1G51950.1	18505759
AT5G20730.1	KRH09813	AT1G52830.1	14729917
AT5G20730.1	KRH23504	AT1G52830.1	14729917
AT5G20730.1	KRH44390	AT1G52830.1	14729917
AT5G20730.1	KRH47514	AT1G52830.1	14729917
AT5G20730.1	KRH09813	AT3G15540.1	14729917
AT5G20730.1	KRH23504	AT3G15540.1	14729917
AT5G20730.1	KRH44390	AT3G15540.1	14729917
AT5G20730.1	KRH47514	AT3G15540.1	14729917
AT5G20730.1	KRH09813	AT3G15540.1	21734647
AT5G20730.1	KRH23504	AT3G15540.1	21734647
AT5G20730.1	KRH44390	AT3G15540.1	21734647
AT5G20730.1	KRH47514	AT3G15540.1	21734647
AT5G20730.1	KRG92429	AT3G23050.1	21734647
AT5G20730.1	KRH34377	AT3G23050.1	21734647
AT5G20730.1	KRH05621	AT3G50060.1	17675404
AT5G20730.1	KRH15420	AT3G50060.1	17675404
AT5G20730.1	KRH61351	AT3G50060.1	17675404
AT5G20730.1	KRG92430	AT4G14560.1	14729917
AT5G20730.1	KRH34375	AT4G14560.1	14729917
AT5G20730.1	KRH69048	AT4G14560.1	14729917
AT5G20730.1	KRG92430	AT4G14560.1	21734647
AT5G20730.1	KRH34375	AT4G14560.1	21734647
AT5G20730.1	KRH69048	AT4G14560.1	21734647
AT5G20730.1	KRG92430	AT4G14560.1	9342315
AT5G20730.1	KRH34375	AT4G14560.1	9342315
AT5G20730.1	KRH69048	AT4G14560.1	9342315
AT5G20730.1	KRH39325	AT4G29080.1	21734647
AT5G20730.1	KRH41538	AT4G29080.1	21734647
AT5G20730.1	KRH60250	AT4G29080.1	21734647
AT5G20730.1	KRH74730	AT4G29080.1	21734647
AT5G20730.1	KRH02575	AT5G20730.1	14729917
AT5G20730.1	KRH12587	AT5G20730.1	14729917
AT5G20730.1	KRH19355	AT5G20730.1	14729917
AT5G20730.1	KRH37536	AT5G20730.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12587	Soybean	nucleus	95.91	96.17
KRH02575	Soybean	nucleus	83.91	83.1
KRH19355	Soybean	nucleus	83.47	83.02
VIT_11s0016g00640.t01	Wine grape	nucleus	74.76	72.81
KRH58711	Soybean	nucleus	24.44	69.97
Solyc07g042260.2.1	Tomato	nucleus	68.53	67.81
PGSC0003DMT400006151	Potato	nucleus	68.89	66.98
AT1G19220.1	Thale cress	nucleus	64.53	66.85
CDX83778	Canola	nucleus	60.0	66.18
Bra025720.1-P	Field mustard	nucleus	61.6	66.06
CDY26690	Canola	nucleus	61.6	66.06
CDY41030	Canola	nucleus	61.6	65.5
Bra016517.1-P	Field mustard	nucleus	58.67	65.35
CDX96672	Canola	nucleus	59.2	65.29
CDX92437	Canola	nucleus	59.29	64.13
Bra020125.1-P	Field mustard	nucleus	62.4	63.82
GSMUA_Achr9P18170_001	Banana	nucleus	48.36	63.7
GSMUA_Achr3P10240_001	Banana	nucleus	34.4	62.42
CDY45069	Canola	nucleus	61.42	62.08
AT5G20730.1	Thale cress	nucleus	64.09	61.89
CDY16560	Canola	nucleus	53.96	58.25
Os06t0196700-02	Rice	nucleus	51.82	55.26
KXG19536	Sorghum	nucleus	51.02	54.51
Zm00001d045026_P002	Maize	nucleus	50.93	54.42
TraesCS7D01G161900.1	Wheat	nucleus	51.11	53.99
TraesCS7A01G160800.1	Wheat	nucleus	51.11	53.94
TraesCS7B01G065800.2	Wheat	plastid	50.84	52.91
HORVU7Hr1G033820.5	Barley	nucleus	49.51	52.25
KRH49070	Soybean	nucleus	48.36	49.01
KRH73577	Soybean	nucleus	38.31	48.1
KRH74145	Soybean	nucleus	47.2	48.1
Bra002327.1-P	Field mustard	nucleus	61.33	47.95
KRH14545	Soybean	nucleus	38.04	47.77
KRH42603	Soybean	nucleus	38.31	47.62
KRH11131	Soybean	nucleus	37.69	47.22
KRH21113	Soybean	nucleus	37.51	47.1
KRH72896	Soybean	nucleus	35.38	46.99
KRH17251	Soybean	nucleus	35.2	46.98
KRG98044	Soybean	nucleus	34.67	46.37
KRH30740	Soybean	nucleus	34.67	46.21
KRH60117	Soybean	nucleus	44.98	46.04
KRH41404	Soybean	nucleus	44.27	44.74
KRH22924	Soybean	nucleus	14.31	44.11
KRH17404	Soybean	nucleus	34.4	41.61
KRH05923	Soybean	nucleus	34.4	41.48
KRH06026	Soybean	nucleus	23.11	39.1
KRH26266	Soybean	nucleus	23.02	38.95
KRH51289	Soybean	nucleus	23.11	38.58
KRH75716	Soybean	nucleus	22.04	35.84
KRH65922	Soybean	nucleus	21.78	35.46
KRH49135	Soybean	nucleus	20.89	35.39
KRH00001	Soybean	nucleus	20.8	35.24
KRH68924	Soybean	nucleus	20.62	35.05
KRH06451	Soybean	nucleus	21.51	33.8
KRH47893	Soybean	nucleus	21.42	33.66
KRG96367	Soybean	nucleus	19.73	32.79
KRH68102	Soybean	nucleus	16.8	32.03
KRH63855	Soybean	nucleus	23.82	31.79
KRG89021	Soybean	nucleus	22.31	31.69
KRH54110	Soybean	nucleus	23.73	31.67
KRH41062	Soybean	nucleus	23.64	31.26
KRH59742	Soybean	nucleus	23.82	31.24
KRH24914	Soybean	nucleus	21.96	31.19
KRH26391	Soybean	nucleus	21.24	29.91

Protein Annotations

EntrezGene:100804628	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02005461
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_09G072200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:I1L1T2	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRH37536	ProteinID:KRH37536	ProteinID:KRH37536.1	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002337D01	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:7477988..7486569

Molecular Weight (calculated)

125848.0 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.698

Length

1125 amino acids

Sequence
(BLAST)

0001: MKAPPNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS VVVYFPQGHS EQVAASMQKE ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP
0101: VNKYDKEALL ASDMGLKQNQ QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPLA KYNKALFNQV SLGMRFRMMF
0301: ETEESGVRRY MGTITGITDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD
0401: LGMKDASSSV FPGFSLMQWM SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN QVNQLQQSPT SWSPQQQQQQ
0501: QQQKLQSMLQ TPLNPLQQQR QQQLPVPQNL PQPQQQQPQM PQQRAQQPQE QQQQSCQQTI MNNGAVASNQ IPNQCVQQPV SYSQLQQQQL ISGSIPPQQC
0601: FPSPNKNTLL MTSLPQDSQF QQQIDQQASL LQRQQLQQQQ QQTQLQSSPL QLLQQSLSQR APQQPQMTQM SQQNSSDQQP QLQMLQKLQQ QQQQQQQQQQ
0701: QKPLSTSSPL LQSQLLQQQN THQQNQQFPQ LPLSQGHQPQ QLGNNAFSME KLLNGNNYSS SSLMQTQQLS VNQPHNTQKS LTNTRAPSTL TDGDAPSCST
0801: SPSTNNCQIS PNLMKRNQQV SATLGGPSVV EPTNHLMQEL HSKSEMQIKH ELPSVRGTDQ LKFKGTVADQ MEASSGTSYC IDPNNIHQNF PLPNFCMDGD
0901: VQSHPRNNLP FASNLDGLTP DTLLSRGYDS QKDFQNLLSN YGGAPRDIET ELSTAALSPQ PFGVPDMPFK PGCSSDIAIN DPGVLNNGLW ANQTQRMRTY
1001: TKVQKCGSVG RCIDVTRYKG YDELRHDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS SEVQQMSLDG DLGHVPVPNQ
1101: ACSGTDNGNA WRGQYDDNSA ASFNR

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.