Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44271 | Soybean | nucleus | 92.43 | 93.61 |
| KRH09948 | Soybean | nucleus | 58.04 | 57.5 |
| Solyc03g121060.2.1 | Tomato | nucleus | 49.84 | 55.05 |
| PGSC0003DMT400006709 | Potato | nucleus | 48.9 | 54.77 |
| KRH23388 | Soybean | nucleus | 58.99 | 54.05 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 35.96 | 50.0 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 34.38 | 48.02 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 34.07 | 48.0 |
| Bra018938.1-P | Field mustard | nucleus | 37.22 | 46.64 |
| CDY22876 | Canola | nucleus | 37.22 | 46.64 |
| CDY33844 | Canola | nucleus | 35.96 | 45.06 |
| CDX87863 | Canola | nucleus | 35.96 | 44.88 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 31.86 | 44.3 |
| AT3G16500.1 | Thale cress | nucleus | 37.54 | 44.24 |
| CDY34957 | Canola | nucleus | 37.54 | 44.24 |
| Bra021184.1-P | Field mustard | nucleus | 37.54 | 44.24 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 34.38 | 44.13 |
| CDY64626 | Canola | cytosol | 37.22 | 43.87 |
| CDY43104 | Canola | nucleus | 36.91 | 43.82 |
| Os01t0190300-01 | Rice | nucleus | 32.81 | 43.7 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 32.18 | 43.4 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 31.23 | 43.23 |
| AT1G51950.1 | Thale cress | nucleus | 36.28 | 43.07 |
| Bra014303.1-P | Field mustard | nucleus | 36.59 | 42.96 |
| CDX75884 | Canola | cytosol | 36.59 | 42.8 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 58.99 | 42.6 |
| CDY46538 | Canola | nucleus | 36.28 | 42.59 |
| Bra001634.1-P | Field mustard | nucleus | 36.28 | 42.28 |
| CDX82399 | Canola | nucleus | 36.28 | 42.28 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 30.6 | 42.17 |
| CDY53439 | Canola | nucleus | 35.96 | 41.76 |
| EES17832 | Sorghum | nucleus | 31.55 | 41.32 |
| CDX92077 | Canola | nucleus | 36.91 | 41.05 |
| Bra022164.1-P | Field mustard | nucleus | 36.91 | 41.05 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 29.65 | 40.87 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 30.28 | 39.18 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 30.28 | 38.87 |
| Os02t0228900-01 | Rice | nucleus | 36.28 | 38.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.91 | 37.99 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 29.97 | 37.7 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 39.43 | 37.31 |
| Os05t0523300-01 | Rice | nucleus | 38.17 | 37.0 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 34.38 | 36.7 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.43 | 36.44 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 33.75 | 36.39 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 39.12 | 36.36 |
| OQU84670 | Sorghum | nucleus | 33.44 | 36.3 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 33.75 | 36.27 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 40.06 | 35.98 |
| Os01t0741900-01 | Rice | nucleus | 37.54 | 35.52 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 41.01 | 35.42 |
| Zm00001d016277_P002 | Maize | nucleus | 33.12 | 35.12 |
| Zm00001d038784_P001 | Maize | nucleus | 38.8 | 34.84 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 38.17 | 33.89 |
| KXG33336 | Sorghum | nucleus | 38.17 | 33.15 |
| KXG22376 | Sorghum | nucleus | 35.33 | 32.46 |
| OQU86163 | Sorghum | golgi, plastid | 31.86 | 28.21 |
| KRH68346 | Soybean | plastid | 15.46 | 27.22 |
| KRH67461 | Soybean | nucleus | 20.82 | 26.94 |
| KRH32251 | Soybean | nucleus | 24.29 | 26.83 |
| KRG96613 | Soybean | plastid | 14.83 | 26.55 |
| KRH19625 | Soybean | nucleus | 24.29 | 26.46 |
| KRH33660 | Soybean | plastid | 14.51 | 25.99 |
| KRH69143 | Soybean | plastid | 14.51 | 25.56 |
| KRH20139 | Soybean | nucleus | 16.4 | 25.24 |
| KRH03666 | Soybean | cytosol | 15.77 | 25.13 |
| KRH52428 | Soybean | nucleus | 17.03 | 23.79 |
| KRH61758 | Soybean | nucleus | 16.72 | 23.45 |
| KRG95739 | Soybean | nucleus | 18.61 | 21.93 |
| KRH19441 | Soybean | endoplasmic reticulum, vacuole | 15.14 | 19.67 |
| KRH02508 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 15.14 | 18.46 |
Protein Annotations
| EntrezGene:100793822 | MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | EMBL:ACUP02004142 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlantsGene:GLYMA_07G015200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | UniProt:I1KGI1 | InterPro:IPR000270 | EnsemblPlants:KRH47203 | ProteinID:KRH47203 | ProteinID:KRH47203.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 |
| UniParc:UPI00023C6D57 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:1195863..1199570
Molecular Weight (calculated)
34632.9 Da
IEP (calculated)
9.429
GRAVY (calculated)
-0.618
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MWQRSHKSSE ERKLELRLGP PGEESLNESI RKCNRERRRN ESPLTLGCFS TQKIFTSDTP GPGGAMLPSA WPSTSYHHQD QAKAKASSFL QLQSSPQNMI
101: LMGKDVSQFS CVEKKSFSPS CANPAVSKRT ASGPVVGWPP IRSFRKNIAS GSTSNSKLPS GSQQQHQNVV PGKVASQKPT DNSGKGLFVK INMDGVAIGR
201: KVDINAYDSY EKLSSAVDEL FRGLLAEMKL SHIASSQCCS GQRDSCAGGI QNKEQEEKSN TGLLVGSGEY TLVYEDNEGD RMLVGDVPWH MFVSTVKRLR
301: VLKSSDLPAF TLGSKQD
101: LMGKDVSQFS CVEKKSFSPS CANPAVSKRT ASGPVVGWPP IRSFRKNIAS GSTSNSKLPS GSQQQHQNVV PGKVASQKPT DNSGKGLFVK INMDGVAIGR
201: KVDINAYDSY EKLSSAVDEL FRGLLAEMKL SHIASSQCCS GQRDSCAGGI QNKEQEEKSN TGLLVGSGEY TLVYEDNEGD RMLVGDVPWH MFVSTVKRLR
301: VLKSSDLPAF TLGSKQD
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.