Factsheet for VIT_09s0002g03410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_02s0025g01740.t01
VIT_04s0079g00200.t01
VIT_05s0020g00690.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_06s0004g03130.t01
VIT_06s0004g04740.t01
VIT_07s0005g02550.t01
VIT_11s0016g00640.t01
VIT_12s0035g01800.t01
VIT_13s0019g04380.t01
VIT_18s0001g13930.t01
VIT_19s0090g01210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51950.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT1G51950.1	VIT_11s0016g00640.t01	AT1G19220.1	18505759
AT1G51950.1	VIT_11s0016g00640.t01	AT1G19220.1	21734647
AT1G51950.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT1G51950.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT1G51950.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT1G51950.1	VIT_07s0005g02550.t01	AT2G46990.1	21734647
AT1G51950.1	VIT_05s0020g00690.t01	AT3G06430.1	21798944
AT1G51950.1	VIT_06s0004g04740.t01	AT3G18140.1	21798944
AT1G51950.1	VIT_05s0020g04690.t01	AT3G23050.1	21798944
AT1G51950.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT1G51950.1	VIT_05s0020g04680.t01	AT4G14560.1	21798944
AT1G51950.1	VIT_02s0025g01740.t01	AT4G23980.1	21734647
AT1G51950.1	VIT_11s0016g00640.t01	AT5G20730.1	18505759
AT1G51950.1	VIT_11s0016g00640.t01	AT5G20730.1	21734647
AT1G51950.1	VIT_04s0079g00200.t01	AT5G37020.1	21734647
AT1G51950.1	VIT_19s0090g01210.t01	AT5G55220.1	21798944
AT1G51950.1	VIT_06s0004g03130.t01	AT5G60450.1	22096563
AT3G16500.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT3G16500.1	VIT_13s0019g04380.t01	AT4G30080.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09948	Soybean	nucleus	48.75	66.88
Solyc03g121060.2.1	Tomato	nucleus	42.82	65.51
PGSC0003DMT400006709	Potato	nucleus	41.46	64.31
KRH23388	Soybean	nucleus	49.89	63.29
KRH44271	Soybean	nucleus	42.14	59.11
KRH47203	Soybean	nucleus	42.6	58.99
AT3G16500.1	Thale cress	nucleus	33.49	54.65
CDY43104	Canola	nucleus	32.8	53.93
CDX87863	Canola	nucleus	30.98	53.54
Bra021184.1-P	Field mustard	nucleus	32.8	53.53
CDY34957	Canola	nucleus	32.8	53.53
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	27.79	53.51
AT1G51950.1	Thale cress	nucleus	32.35	53.18
CDY64626	Canola	cytosol	32.57	53.16
VIT_04s0008g00220.t01	Wine grape	nucleus	41.46	52.75
CDY22876	Canola	nucleus	30.3	52.57
Bra018938.1-P	Field mustard	nucleus	30.07	52.17
Bra014303.1-P	Field mustard	nucleus	31.89	51.85
TraesCS1A01G122600.2	Wheat	nucleus	26.42	51.56
CDY33844	Canola	nucleus	29.61	51.38
CDX75884	Canola	cytosol	31.66	51.29
CDY46538	Canola	nucleus	31.44	51.11
TraesCS1D01G123500.1	Wheat	nucleus	26.42	51.1
CDX82399	Canola	nucleus	31.44	50.74
Bra001634.1-P	Field mustard	nucleus	31.44	50.74
CDY53439	Canola	nucleus	31.44	50.55
Bra022164.1-P	Field mustard	nucleus	32.35	49.82
CDX92077	Canola	nucleus	32.35	49.82
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	25.74	49.34
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	25.74	48.09
HORVU1Hr1G028170.4	Barley	cytosol, nucleus, plastid	26.65	47.37
Os01t0190300-01	Rice	nucleus	25.51	47.06
Zm00001d010360_P001	Maize	cytosol, nucleus	24.15	46.49
TraesCS3B01G127400.1	Wheat	nucleus	23.92	45.65
GSMUA_AchrUn_...	Banana	nucleus	31.66	45.13
EES17832	Sorghum	nucleus	24.83	45.04
TraesCS3D01G110200.1	Wheat	nucleus	23.01	43.91
Os02t0228900-01	Rice	nucleus	29.84	43.67
TraesCS3D01G276600.1	Wheat	cytosol, mitochondrion, nucleus	32.8	42.99
HORVU3Hr1G019750.4	Barley	cytosol, nucleus, plastid	23.92	42.86
Os01t0741900-01	Rice	nucleus	32.57	42.69
TraesCS3A01G276500.1	Wheat	cytosol, mitochondrion, nucleus	32.57	41.94
OQU84670	Sorghum	nucleus	27.79	41.78
Zm00001d037691_P003	Maize	cytosol, nucleus	23.46	41.7
TraesCS3B01G310500.1	Wheat	cytosol, mitochondrion, nucleus	32.57	41.69
HORVU3Hr1G070620.5	Barley	cytosol, mitochondrion, nucleus	33.26	41.36
TraesCS3A01G108400.1	Wheat	cytosol, nucleus, peroxisome	23.69	41.27
Zm00001d016277_P002	Maize	nucleus	27.56	40.47
GSMUA_Achr7P13680_001	Banana	nucleus	33.71	40.33
Os05t0523300-01	Rice	nucleus	29.84	40.06
TraesCS1A01G343300.1	Wheat	nucleus	26.42	39.46
TraesCS1D01G345400.1	Wheat	nucleus	26.42	39.32
TraesCS1B01G356600.1	Wheat	cytosol	26.42	39.06
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	30.75	37.82
KXG33336	Sorghum	nucleus	31.44	37.81
Zm00001d038784_P001	Maize	nucleus	29.39	36.54
KXG22376	Sorghum	nucleus	27.79	35.36
OQU86163	Sorghum	golgi, plastid	26.42	32.4
VIT_07s0005g02550.t01	Wine grape	plastid	12.07	30.29
VIT_07s0005g04380.t01	Wine grape	nucleus	20.73	29.74
VIT_05s0049g01970.t01	Wine grape	nucleus	20.5	28.04
VIT_05s0020g01070.t01	Wine grape	plastid	12.07	26.77
VIT_11s0016g05640.t01	Wine grape	cytosol	10.25	24.46
VIT_04s0008g05560.t01	Wine grape	extracellular	12.53	24.23

Protein Annotations

MapMan:11.2.2.1.2	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:CCB59418	ProteinID:CCB59418.1
UniProt:F6HY95	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF2	SUPFAM:SSF54277	UniParc:UPI0002109FAF	ArrayExpress:VIT_09s0002g03410	EnsemblPlantsGene:VIT_09s0002g03410
EnsemblPlants:VIT_09s0002g03410.t01	SEG:seg	:	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HY95]

Coordinates

chr9:-:3075730..3079091

Molecular Weight (calculated)

48857.4 Da

IEP (calculated)

8.987

GRAVY (calculated)

-0.707

Length

439 amino acids

Sequence
(BLAST)

001: MVFKFQSWGL ELKFPYFPAR FLCESRKKKA ELRYLFVWVA SNTMEGCSRK DEVCPQLLDL ISKDREWVLK SGEGRSHGSP EEKKLELRLG PPGEDWTIKD
101: NTNNNNYRER DESLRYLRYL SSMASMTHNC SNNNNNSNII NNTTTSCGKR GFLETVERNT GEEGWIMNSN GNQNQKQAAN NTNNNGVLPS PWSSSGYQVK
201: TQQQQQQTKA SFLQFQSSPP VITKESSQPC CTKVVDLQNT EKKAFSPASA NTAVPNSSQK RSAPTAVVGW PPIRSFRKNL ASSSSSKPAN ESQDVVPNKI
301: ASEKPVEVGK KGLFVKINMD GVPIGRKVDL TAYDSYEKLS SAVDELFRGL LAAQRDSSAG GIQTKHEEEK TITGLLDGSG EYTLVYEDNE GDRVLVGDVP
401: WHMFVNTVKR LRVLKSSELS ALCLGSSKQE KAPLDSALK

Best Arabidopsis Sequence Match ( AT3G16500.1 )
(BLAST)

001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH

Arabidopsis Description

IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.