Factsheet for VIT_06s0004g03130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01740.t01
VIT_06s0004g03130.t01
VIT_09s0002g05150.t01
VIT_12s0035g01800.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT5G60450.1	VIT_02s0025g01740.t01	AT1G34310.1	22096563
AT5G60450.1	VIT_09s0002g05150.t01	AT1G52830.1	22096563
AT5G60450.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT5G60450.1	VIT_06s0004g03130.t01	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22924	Soybean	nucleus	35.71	78.08
Solyc11g069190.1.1	Tomato	nucleus	72.93	71.76
PGSC0003DMT400020839	Potato	nucleus	72.68	71.52
KRG89021	Soybean	nucleus	70.93	71.46
KRH24914	Soybean	nucleus	70.68	71.21
KRH26391	Soybean	nucleus	70.55	70.46
CDY31545	Canola	nucleus	62.03	65.39
CDX80168	Canola	nucleus	62.16	65.35
Bra002479.1-P	Field mustard	nucleus	61.78	65.04
AT5G60450.1	Thale cress	nucleus	63.78	64.59
VIT_18s0089g00910.t01	Wine grape	nucleus	32.21	39.6
VIT_12s0035g01800.t01	Wine grape	nucleus	33.21	39.09
VIT_02s0025g01740.t01	Wine grape	nucleus	31.83	37.24
VIT_01s0244g00150.t01	Wine grape	nucleus	34.34	35.63
VIT_15s0046g00290.t01	Wine grape	nucleus	31.08	35.33
VIT_17s0000g00320.t01	Wine grape	nucleus	37.09	34.34
VIT_07s0104g01230.t01	Wine grape	nucleus	29.7	34.05
VIT_10s0003g04100.t01	Wine grape	nucleus	31.33	27.53
VIT_12s0028g01170.t01	Wine grape	nucleus	30.83	26.54
VIT_18s0001g13930.t01	Wine grape	nucleus	31.08	26.02
VIT_11s0065g00310.t01	Wine grape	nucleus	32.96	23.59
VIT_04s0079g00200.t01	Wine grape	nucleus	20.43	23.06
VIT_11s0016g00640.t01	Wine grape	nucleus	30.58	21.13

Protein Annotations

EntrezGene:100243320	wikigene:100243320	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CBI16287	ProteinID:CBI16287.3	UniProt:D7SKV9
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100243320	wikigene:LOC100243320	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF20
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	TIGR:TC66988	UniParc:UPI00015C7DE1	ArrayExpress:VIT_06s0004g03130
EnsemblPlantsGene:VIT_06s0004g03130	EnsemblPlants:VIT_06s0004g03130.t01	unigene:Vvi.20194	RefSeq:XP_002285019	RefSeq:XP_002285019.2	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:D7SKV9]

Coordinates

chr6:+:3879617..3888296

Molecular Weight (calculated)

88199.2 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.444

Length

798 amino acids

Sequence
(BLAST)

001: MEIDLNHAVT EVEKHAFCNG DCDKASCVCC LSSSSSSSSA SNSSASPDSS SIYLELWHVC AGRLTSLPKK GNVVVYFPQG HLEQAASSSP FPPMDISTFD
101: LPPQIFCRVV NVQLLANKEN DEVYTQVTLL PQPELAGINL EGKELEGLGV DEEGGGGSPT KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ
201: QRPSQELVAK DLHGVEWRFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRGEGGE LRLGIRRAVR PRNGLPDSII GNQNSYPNVL SLAANAVATK
301: SMFHVFYSPR ASHAEFVIPY QKYVKSITNP ISIGTRFKMR YDMDDSPERR SSGVVTGIGD LDPYRWPNSK WRCLMVRWDD DIVSDPQERV SPWEIDPSVS
401: LPPLSIQSSP RLKKLRTSLQ ATPPNNPING GGGFLDFEES VRSSKVLQGQ ENVGFVSPLY GCDKVNRSLD FEMQNPSLAS TGIEKANFCE FMRAPPTTYT
501: GFLESDRFPK VLQGQEIGPL RSLAGKSDFN LGSWGKPNLG CNLFNMYQKP KPNFYPLASE GIRNMYFPYN DIYKGGQDPV MLSYASNFPR ENVPFNPSSI
601: RSGVIGTEVR KLNIPNEPKP PENISAPPNL ETNLKHQKDD TFSGTAAGCK LFGFSLTGET PPNSQNSGKR SCTKVHKQGN LVGRAIDLSR LNGYGDLFSE
701: LERLFGMEGL LRDPDKGWQI LYTDSENDMM VVGDDPWHEF CNVVSKIHIY TQEEVEKMTI GIISDDTQSC LEEAPVILDV SKSSSVGQPD SSPTVIRI

Best Arabidopsis Sequence Match ( AT5G60450.2 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGSASSIYS ELWHACAGPL TCLPKKGNVV VYFPQGHLEQ DAMVSYSSPL EIPKFDLNPQ IVCRVVNVQL
101: LANKDTDEVY TQVTLLPLQE FSMLNGEGKE VKELGGEEER NGSSSVKRTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQQRPS QELIAKDLHG
201: VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RDEGGELRLG IRRAARPRNG LPDSIIEKNS CSNILSLVAN AVSTKSMFHV FYSPRATHAE
301: FVIPYEKYIT SIRSPVCIGT RFRMRFEMDD SPERRCAGVV TGVCDLDPYR WPNSKWRCLL VRWDESFVSD HQERVSPWEI DPSVSLPHLS IQSSPRPKRP
401: WAGLLDTTPP GNPITKRGGF LDFEESVRPS KVLQGQENIG SASPSQGFDV MNRRILDFAM QSHANPVLVS SRVKDRFGEF VDATGVNPAC SGVMDLDRFP
501: RVLQGQEICS LKSFPQFAGF SPAAAPNPFA YQANKSSYYP LALHGIRSTH VPYQNPYNAG NQSSGPPSRA INFGEETRKF DAQNEGGLPN NVTADLPFKI
601: DMMGKQKGSE LNMNASSGCK LFGFSLPVET PASKPQSSSK RICTKVHKQG SQVGRAIDLS RLNGYDDLLM ELERLFNMEG LLRDPEKGWR ILYTDSENDM
701: MVVGDDPWHD FCNVVWKIHL YTKEEVENAN DDNKSCLEQA ALMMEASKSS SVSQPDSSPT ITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.