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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX80168
CDX83741
CDX94484
CDX94528
CDX94748
CDX94777
CDY01393
CDY08767
CDY18679
CDY21993
CDY24162
CDY24168
CDY26042
CDY27291
CDY29392
CDY31545
CDY33603
CDY36940
CDY39348
CDY41720
CDY45607
CDY48583
CDY49005
CDY53305
CDY53570
CDY53800
CDY54111
CDY55738
CDY61164
CDY62586
CDY65065
CDY67714
CDY68170
CDY68807
CDY69758

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60450.1 CDY53305 AT1G15580.1 21734647
AT5G60450.1 CDX83741 AT1G19850.1 22096563
AT5G60450.1 CDY01393 AT1G19850.1 22096563
AT5G60450.1 CDY29392 AT1G19850.1 22096563
AT5G60450.1 CDY39348 AT1G19850.1 22096563
AT5G60450.1 CDY61164 AT1G19850.1 22096563
AT5G60450.1 CDY62586 AT1G19850.1 22096563
AT5G60450.1 CDX94484 AT1G34310.1 22096563
AT5G60450.1 CDX94528 AT1G34310.1 22096563
AT5G60450.1 CDX94748 AT1G34310.1 22096563
AT5G60450.1 CDX94777 AT1G34310.1 22096563
AT5G60450.1 CDY21993 AT1G34310.1 22096563
AT5G60450.1 CDY24162 AT1G34310.1 22096563
AT5G60450.1 CDY24168 AT1G34310.1 22096563
AT5G60450.1 CDY36940 AT1G34310.1 22096563
AT5G60450.1 CDY41720 AT1G34310.1 22096563
AT5G60450.1 CDY48583 AT1G34310.1 22096563
AT5G60450.1 CDY49005 AT1G34310.1 22096563
AT5G60450.1 CDY53570 AT1G34310.1 22096563
AT5G60450.1 CDY54111 AT1G34310.1 22096563
AT5G60450.1 CDY55738 AT1G34310.1 22096563
AT5G60450.1 CDY67714 AT1G34310.1 22096563
AT5G60450.1 CDY69758 AT1G34310.1 22096563
AT5G60450.1 CDY26042 AT1G52830.1 22096563
AT5G60450.1 CDY53800 AT1G52830.1 22096563
AT5G60450.1 CDY68807 AT1G52830.1 22096563
AT5G60450.1 CDY27291 AT1G59750.1 22096563
AT5G60450.1 CDY33603 AT1G59750.1 22096563
AT5G60450.1 CDY65065 AT1G59750.1 22096563
AT5G60450.1 CDX80168 AT5G60450.1 22096563
AT5G60450.1 CDY31545 AT5G60450.1 22096563
AT5G60450.1 CDY08767 AT5G65670.1 22096563
AT5G60450.1 CDY18679 AT5G65670.1 22096563
AT5G60450.1 CDY45607 AT5G65670.1 22096563
AT5G60450.1 CDY68170 AT5G65670.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002479.1-P Field mustard nucleus 99.34 99.21
CDX80168 Canola nucleus 94.45 94.2
AT5G60450.1 Thale cress nucleus 87.19 83.76
KRH22924 Soybean nucleus 34.35 71.23
VIT_06s0004g03130.t01 Wine grape nucleus 65.39 62.03
KRH24914 Soybean nucleus 61.96 59.22
KRG89021 Soybean nucleus 61.82 59.09
KRH26391 Soybean nucleus 61.96 58.7
PGSC0003DMT400020839 Potato nucleus 62.22 58.08
Solyc11g069190.1.1 Tomato nucleus 61.96 57.83
CDX80025 Canola nucleus 29.99 38.87
CDX95705 Canola nucleus 27.74 38.53
CDY27291 Canola nucleus 31.31 38.29
CDY47607 Canola nucleus 30.52 38.24
CDY50434 Canola nucleus 31.04 37.6
CDY10978 Canola nucleus 31.04 37.6
CDY65065 Canola nucleus 32.1 36.76
CDY33603 Canola nucleus 32.1 36.76
CDY03502 Canola nucleus 29.06 36.67
CDX94748 Canola endoplasmic reticulum, vacuole 16.91 34.59
CDY67714 Canola nucleus 23.65 33.71
CDY69758 Canola nucleus 18.49 33.65
CDY21993 Canola nucleus 23.78 33.03
CDY53570 Canola nucleus 21.53 32.53
CDY48583 Canola nucleus 23.38 32.36
CDX86939 Canola nucleus 36.33 32.35
CDY00245 Canola nucleus 36.2 32.2
CDY67247 Canola nucleus 35.93 31.96
CDX87230 Canola nucleus 34.87 31.88
CDY41720 Canola nucleus 23.12 31.82
CDY39274 Canola nucleus 31.84 30.94
CDY07460 Canola nucleus 31.7 30.73
CDY36940 Canola nucleus 22.46 30.69
CDY16798 Canola nucleus 35.4 30.56
CDY49005 Canola nucleus 22.46 30.52
CDY24168 Canola nucleus 22.59 30.37
CDX94777 Canola nucleus 22.06 29.98
CDY53537 Canola nucleus 32.23 29.98
CDX74594 Canola nucleus 32.36 29.91
CDY12048 Canola nucleus 32.63 29.16
CDX90245 Canola nucleus 32.5 28.87
CDY54111 Canola nucleus 21.4 28.57
CDY55738 Canola nucleus 20.34 28.52
CDY02285 Canola nucleus 32.5 28.18
CDY09598 Canola nucleus 32.23 28.05
CDY61164 Canola nucleus 30.38 26.71
CDY29392 Canola nucleus 30.91 26.71
CDY62586 Canola nucleus 29.72 26.6
CDX83741 Canola nucleus 29.59 26.48
CDY01393 Canola nucleus 29.99 26.24
CDY39348 Canola nucleus 30.25 26.05
CDX94484 Canola nucleus 20.87 25.24
CDX96672 Canola nucleus 32.63 24.22
CDX83778 Canola nucleus 32.63 24.22
CDY26690 Canola nucleus 32.76 23.64
CDY41030 Canola nucleus 32.63 23.35
CDY16560 Canola nucleus 31.44 22.84
CDX92437 Canola nucleus 31.31 22.79
CDX94528 Canola nucleus 19.82 22.42
CDY45069 Canola nucleus 31.84 21.65
CDY24162 Canola nucleus 15.46 18.0
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078GYL7UniProt:A0A078GYL7
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDY31545ProteinID:CDY31545ProteinID:CDY31545.1InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00047861001InterPro:IPR000270InterPro:IPR003340
InterPro:IPR015300InterPro:PB1_domPFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745
PANTHER:PTHR31384PANTHER:PTHR31384:SF20SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0004EF4096
SEG:seg:::::
Description
BnaA10g13260DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078GYL7]
Coordinates
chrLK032274:+:170116..173682
Molecular Weight (calculated)
83797.8 Da
IEP (calculated)
6.786
GRAVY (calculated)
-0.494
Length
757 amino acids
Sequence
(BLAST)
001: MEFDLNTEFA EVEEEENDKG KRLGVSPSSS SSCSSGSSSS STTASASSIY SELWHACAGP LTSLPKKGNV VVYFPQGHLE QGAMVSYSSP LDIPKLDLSP
101: QIFCRVANVH LLANKETDEV YTQVTLLPLQ ELSVLNGEGK EVRELGGDEE KNGSSSVKKT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF APLDYKQQRP
201: SQELIAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK SLVSGDAVLF LRDENGELRL GIRRSARPRN GLPDSIIQKY SSSSILSLVA NAVSNKSMFH
301: VFYSPRATHS EFVIPYEKYI TSIKNPICIG TRFRMRFEMD DSPERRCAGV VTGVCDMDPY RWPNSKWRCL LVRWDESFMS DHQERVSPWE IDPSGSLPPL
401: SIQSSPRPKR PWAGLLGTTT PQGNPITERG GFLDFEESVR PSKVLQGQEN IGSATSSSPL QGFDVMNRRI LDFAGMQQSH ANPLLLSSRV KDRFGEFVDT
501: TSLDLDRFPR VLQGQEICSL RSFPQIAGLS PGKASLGYNG AFAYQANKTS FYPLASQGIR SSHIPYQSAG DKSLSHPSSR KFDAQGEDGG LPKIDMMGTE
601: KGREVNMNAS TTGCKLFGFS LPVGTPASNQ QSSSKRICTK VHKQGSLVGR AIDLSRLNGY NDLLTELERL FNMEGLLRDP EKGWRILYTD SENDMMVVGD
701: DPWHDFCSVV LKIHLYTKEE VENGNDDNRS CLEQAALMME ASKSSSVSQP DSSPTGH
Best Arabidopsis Sequence Match ( AT5G60450.2 )
(BLAST)
001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGSASSIYS ELWHACAGPL TCLPKKGNVV VYFPQGHLEQ DAMVSYSSPL EIPKFDLNPQ IVCRVVNVQL
101: LANKDTDEVY TQVTLLPLQE FSMLNGEGKE VKELGGEEER NGSSSVKRTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQQRPS QELIAKDLHG
201: VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RDEGGELRLG IRRAARPRNG LPDSIIEKNS CSNILSLVAN AVSTKSMFHV FYSPRATHAE
301: FVIPYEKYIT SIRSPVCIGT RFRMRFEMDD SPERRCAGVV TGVCDLDPYR WPNSKWRCLL VRWDESFVSD HQERVSPWEI DPSVSLPHLS IQSSPRPKRP
401: WAGLLDTTPP GNPITKRGGF LDFEESVRPS KVLQGQENIG SASPSQGFDV MNRRILDFAM QSHANPVLVS SRVKDRFGEF VDATGVNPAC SGVMDLDRFP
501: RVLQGQEICS LKSFPQFAGF SPAAAPNPFA YQANKSSYYP LALHGIRSTH VPYQNPYNAG NQSSGPPSRA INFGEETRKF DAQNEGGLPN NVTADLPFKI
601: DMMGKQKGSE LNMNASSGCK LFGFSLPVET PASKPQSSSK RICTKVHKQG SQVGRAIDLS RLNGYDDLLM ELERLFNMEG LLRDPEKGWR ILYTDSENDM
701: MVVGDDPWHD FCNVVWKIHL YTKEEVENAN DDNKSCLEQA ALMMEASKSS SVSQPDSSPT ITRV
Arabidopsis Description
ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.