CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68829
CDX72351
CDX75231
CDX75834
CDX80545
CDX82361
CDX82428
CDX83741
CDX87072
CDX88204
CDX89832
CDX92140
CDX92973
CDX95843
CDY01393
CDY10068
CDY10349
CDY10694
CDY13478
CDY15493
CDY18214
CDY19790
CDY20135
CDY21845
CDY26042
CDY27291
CDY29392
CDY30781
CDY32537
CDY33603
CDY36527
CDY36883
CDY39348
CDY39608
CDY46058
CDY46895
CDY53735
CDY53800
CDY61164
CDY62586
CDY63072
CDY63910
CDY65065
CDY68807
CDY71609
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	CDX89832	AT1G04250.1	21734647
AT1G19850.1	CDY10068	AT1G04250.1	21734647
AT1G19850.1	CDY15493	AT1G04250.1	21734647
AT1G19850.1	CDY18214	AT1G04250.1	21734647
AT1G19850.1	CDY32537	AT1G04250.1	21734647
AT1G19850.1	CDY63072	AT1G04250.1	21734647
AT1G19850.1	CDY36527	AT1G15050.1	21734647
AT1G19850.1	CDY39608	AT1G15050.1	21734647
AT1G19850.1	CDX83741	AT1G19850.1	14729917
AT1G19850.1	CDY01393	AT1G19850.1	14729917
AT1G19850.1	CDY29392	AT1G19850.1	14729917
AT1G19850.1	CDY39348	AT1G19850.1	14729917
AT1G19850.1	CDY61164	AT1G19850.1	14729917
AT1G19850.1	CDY62586	AT1G19850.1	14729917
AT1G19850.1	CDX83741	AT1G19850.1	21734647
AT1G19850.1	CDY01393	AT1G19850.1	21734647
AT1G19850.1	CDY29392	AT1G19850.1	21734647
AT1G19850.1	CDY39348	AT1G19850.1	21734647
AT1G19850.1	CDY61164	AT1G19850.1	21734647
AT1G19850.1	CDY62586	AT1G19850.1	21734647
AT1G19850.1	CDX83741	AT1G19850.1	22096563
AT1G19850.1	CDY01393	AT1G19850.1	22096563
AT1G19850.1	CDY29392	AT1G19850.1	22096563
AT1G19850.1	CDY39348	AT1G19850.1	22096563
AT1G19850.1	CDY61164	AT1G19850.1	22096563
AT1G19850.1	CDY62586	AT1G19850.1	22096563
AT1G19850.1	CDX83741	AT1G19850.1	24485461
AT1G19850.1	CDY01393	AT1G19850.1	24485461
AT1G19850.1	CDY29392	AT1G19850.1	24485461
AT1G19850.1	CDY39348	AT1G19850.1	24485461
AT1G19850.1	CDY61164	AT1G19850.1	24485461
AT1G19850.1	CDY62586	AT1G19850.1	24485461
AT1G19850.1	CDY26042	AT1G52830.1	14729917
AT1G19850.1	CDY53800	AT1G52830.1	14729917
AT1G19850.1	CDY68807	AT1G52830.1	14729917
AT1G19850.1	CDY27291	AT1G59750.1	22096563
AT1G19850.1	CDY33603	AT1G59750.1	22096563
AT1G19850.1	CDY65065	AT1G59750.1	22096563
AT1G19850.1	CDX75834	AT3G15540.1	14729917
AT1G19850.1	CDX82428	AT3G15540.1	14729917
AT1G19850.1	CDY20135	AT3G15540.1	14729917
AT1G19850.1	CDY21845	AT3G15540.1	14729917
AT1G19850.1	CDY71748	AT3G15540.1	14729917
AT1G19850.1	CDX75834	AT3G15540.1	22096563
AT1G19850.1	CDX82428	AT3G15540.1	22096563
AT1G19850.1	CDY20135	AT3G15540.1	22096563
AT1G19850.1	CDY21845	AT3G15540.1	22096563
AT1G19850.1	CDY71748	AT3G15540.1	22096563
AT1G19850.1	CDX82361	AT3G17600.1	21734647
AT1G19850.1	CDX92140	AT3G17600.1	21734647
AT1G19850.1	CDX95843	AT3G17600.1	21734647
AT1G19850.1	CDY46058	AT3G17600.1	21734647
AT1G19850.1	CDY46895	AT3G17600.1	21734647
AT1G19850.1	CDY71609	AT3G17600.1	21734647
AT1G19850.1	CDX92973	AT3G23050.1	21734647
AT1G19850.1	CDY10349	AT3G23050.1	21734647
AT1G19850.1	CDY10694	AT3G23050.1	21734647
AT1G19850.1	CDY30781	AT3G23050.1	21734647
AT1G19850.1	CDY63910	AT3G23050.1	21734647
AT1G19850.1	CDY36883	AT4G14560.1	14729917
AT1G19850.1	CDY53735	AT4G14560.1	14729917
AT1G19850.1	CDY36883	AT4G14560.1	22096563
AT1G19850.1	CDY53735	AT4G14560.1	22096563
AT1G19850.1	CDY36883	AT4G14560.1	9342315
AT1G19850.1	CDY53735	AT4G14560.1	9342315
AT1G19850.1	CDX68829	AT4G32280.1	21734647
AT1G19850.1	CDX72351	AT4G32280.1	21734647
AT1G19850.1	CDX75231	AT4G32280.1	21734647
AT1G19850.1	CDY13478	AT4G32280.1	21734647
AT1G19850.1	CDX80545	AT5G25890.1	21734647
AT1G19850.1	CDX87072	AT5G25890.1	21734647
AT1G19850.1	CDX88204	AT5G25890.1	21734647
AT1G19850.1	CDY19790	AT5G25890.1	21734647
AT1G19850.1	CDX80545	AT5G25890.1	22096563
AT1G19850.1	CDX87072	AT5G25890.1	22096563
AT1G19850.1	CDX88204	AT5G25890.1	22096563
AT1G19850.1	CDY19790	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62586	Canola	nucleus	97.75	97.75
CDY61164	Canola	nucleus	87.12	85.6
CDY29392	Canola	nucleus	88.18	85.16
CDY01393	Canola	nucleus	87.0	85.09
CDY39348	Canola	nucleus	87.47	84.19
AT1G19850.1	Thale cress	nucleus	88.89	83.37
VIT_18s0001g13930.t01	Wine grape	nucleus	64.18	56.98
Solyc04g081240.2.1	Tomato	nucleus	61.82	56.24
PGSC0003DMT400009660	Potato	nucleus	61.7	56.19
KRH05923	Soybean	nucleus	61.23	55.52
KRH17404	Soybean	nucleus	60.99	55.48
GSMUA_Achr1P20040_001	Banana	nucleus	46.69	50.51
GSMUA_Achr6P36980_001	Banana	nucleus	46.69	46.04
EES13038	Sorghum	nucleus	47.16	42.18
Zm00001d001945_P002	Maize	nucleus	46.57	41.56
Os04t0664400-01	Rice	nucleus	45.04	41.41
TraesCS2A01G491000.1	Wheat	nucleus	46.57	41.26
TraesCS2B01G519200.2	Wheat	nucleus	46.57	41.26
HORVU2Hr1G109650.18	Barley	nucleus	46.57	41.17
TraesCS2D01G491200.2	Wheat	nucleus	46.45	41.15
Zm00001d026540_P002	Maize	nucleus	46.1	40.67
GSMUA_Achr1P20000_001	Banana	nucleus	45.98	40.06
CDY12048	Canola	nucleus	38.65	38.61
CDY39274	Canola	nucleus	35.34	38.38
CDX90245	Canola	nucleus	38.65	38.38
CDX95705	Canola	nucleus	24.59	38.17
CDY07460	Canola	nucleus	35.22	38.16
CDY02285	Canola	nucleus	39.36	38.14
CDX74594	Canola	nucleus	36.88	38.1
CDY53537	Canola	nucleus	36.52	37.96
CDX80025	Canola	nucleus	26.12	37.84
CDY09598	Canola	nucleus	38.89	37.82
CDY47607	Canola	nucleus	26.48	37.09
CDY27291	Canola	nucleus	26.83	36.67
CDY03502	Canola	nucleus	25.41	35.83
CDY10978	Canola	nucleus	26.12	35.36
CDY50434	Canola	nucleus	26.12	35.36
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	43.38	34.95
CDY65065	Canola	nucleus	26.83	34.34
CDY67714	Canola	nucleus	21.51	34.27
CDX96672	Canola	nucleus	41.25	34.22
CDY33603	Canola	nucleus	26.71	34.19
CDY69758	Canola	nucleus	16.78	34.13
CDY21993	Canola	nucleus	21.87	33.95
CDX83778	Canola	nucleus	40.78	33.82
CDX92437	Canola	nucleus	41.13	33.46
CDY26690	Canola	nucleus	41.49	33.46
CDY41030	Canola	nucleus	41.61	33.27
CDY48583	Canola	nucleus	21.39	33.09
CDY16560	Canola	nucleus	39.83	32.34
CDX94748	Canola	endoplasmic reticulum, vacuole	14.07	32.16
CDY45069	Canola	nucleus	41.25	31.36
CDY41720	Canola	nucleus	19.86	30.55
CDY53570	Canola	nucleus	18.09	30.54
CDX94777	Canola	nucleus	19.5	29.62
CDY31545	Canola	nucleus	26.48	29.59
CDX80168	Canola	nucleus	26.36	29.38
CDY49005	Canola	nucleus	19.27	29.26
CDY36940	Canola	nucleus	19.15	29.24
CDX86939	Canola	nucleus	29.2	29.06
CDY00245	Canola	nucleus	29.2	29.02
CDY24168	Canola	nucleus	19.15	28.77
CDX87230	Canola	nucleus	28.13	28.74
CDY54111	Canola	nucleus	19.15	28.57
CDY67247	Canola	nucleus	28.49	28.32
CDY16798	Canola	nucleus	28.49	27.48
CDY55738	Canola	nucleus	17.38	27.22
CDX94484	Canola	nucleus	16.67	22.52
CDX94528	Canola	nucleus	16.08	20.33
CDY24162	Canola	nucleus	13.95	18.15

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078D2X9	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDX83741	ProteinID:CDX83741	ProteinID:CDX83741.1	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00139470001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0004EEA1E1
SEG:seg	:	:	:	:	:

Description

BnaC08g19040D

Coordinates

chrLK031834:-:104331..109052

Molecular Weight (calculated)

93769.8 Da

IEP (calculated)

5.747

GRAVY (calculated)

-0.450

Length

846 amino acids

Sequence
(BLAST)

001: MASLACGEDK MKTNGLVNGG TTTSSTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL
101: PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVLPV PDFGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD
201: LHENTWAFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA
301: CPAEFVIPLP KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG
401: LKRQLHPSYF AGENDWGSLI KRPLPYATFP NMASEQLMKM MMRPHNNQNA VSSLMPEMQQ NVMMGHGGLL GDVKMQQPMV MNQVVQVQPD NNNPSVSNTS
501: GQEQNLTQSI NAPTITENSS GRANHGNEEL SQKPSALSPL QADPCPEQIY PPQQSDPING FSFLETEELT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP
601: DSTNSFQDMW DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR
701: QDNSGGTGGT SSSNVDFDDT SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKSAI ECMFGLEGLL TRPQTSGWKL VYVDYESDVL
801: LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE EGRKLLNSAC INDLKT

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.