Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13038 | Sorghum | nucleus | 90.61 | 90.8 |
| Zm00001d026540_P002 | Maize | nucleus | 87.97 | 86.97 |
| Os04t0664400-01 | Rice | nucleus | 73.42 | 75.65 |
| TraesCS2D01G491200.2 | Wheat | nucleus | 75.42 | 74.87 |
| TraesCS2B01G519200.2 | Wheat | nucleus | 75.32 | 74.76 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 75.21 | 74.66 |
| HORVU2Hr1G109650.18 | Barley | nucleus | 74.26 | 73.56 |
| Bra025775.1-P | Field mustard | nucleus | 33.54 | 67.66 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 45.46 | 55.12 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 46.41 | 51.28 |
| Bra016492.1-P | Field mustard | nucleus | 41.24 | 46.77 |
| CDX83741 | Canola | nucleus | 41.56 | 46.57 |
| CDY62586 | Canola | nucleus | 41.56 | 46.57 |
| CDY29392 | Canola | nucleus | 42.3 | 45.78 |
| CDY01393 | Canola | nucleus | 41.46 | 45.43 |
| CDY61164 | Canola | nucleus | 41.24 | 45.41 |
| Bra012190.1-P | Field mustard | nucleus | 41.46 | 45.33 |
| AT1G19850.1 | Thale cress | nucleus | 42.93 | 45.12 |
| CDY39348 | Canola | nucleus | 41.67 | 44.94 |
| VIT_18s0001g13930.t01 | Wine grape | nucleus | 45.04 | 44.81 |
| KRH17404 | Soybean | nucleus | 43.78 | 44.62 |
| KRH05923 | Soybean | nucleus | 43.67 | 44.37 |
| Solyc04g081240.2.1 | Tomato | nucleus | 42.72 | 43.55 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 44.41 | 43.36 |
| PGSC0003DMT400009660 | Potato | nucleus | 42.41 | 43.27 |
| Zm00001d001879_P036 | Maize | nucleus | 32.7 | 37.94 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 41.88 | 37.81 |
| Zm00001d050781_P001 | Maize | nucleus | 24.47 | 36.83 |
| Zm00001d014377_P002 | Maize | nucleus | 35.13 | 36.31 |
| Zm00001d031064_P003 | Maize | nucleus | 34.18 | 36.12 |
| Zm00001d041497_P005 | Maize | nucleus | 33.76 | 36.04 |
| Zm00001d053819_P002 | Maize | nucleus | 34.49 | 35.58 |
| Zm00001d036593_P001 | Maize | plastid | 35.02 | 34.58 |
| Zm00001d026590_P003 | Maize | nucleus | 30.91 | 34.55 |
| Zm00001d016838_P001 | Maize | nucleus | 24.68 | 33.29 |
| Zm00001d003601_P006 | Maize | nucleus | 23.42 | 32.55 |
| Zm00001d045026_P002 | Maize | nucleus | 35.76 | 32.19 |
| Zm00001d023659_P007 | Maize | nucleus | 25.84 | 29.66 |
| Zm00001d031522_P007 | Maize | nucleus | 33.97 | 29.65 |
| Zm00001d011953_P002 | Maize | nucleus | 25.0 | 29.4 |
| Zm00001d041056_P019 | Maize | nucleus | 25.95 | 29.15 |
| Zm00001d049295_P001 | Maize | nucleus | 26.9 | 29.11 |
| Zm00001d039267_P005 | Maize | nucleus | 21.1 | 28.9 |
| Zm00001d042267_P003 | Maize | nucleus | 24.89 | 28.85 |
| Zm00001d014690_P014 | Maize | nucleus | 36.08 | 28.64 |
| Zm00001d015243_P001 | Maize | nucleus | 31.54 | 27.38 |
| Zm00001d052637_P001 | Maize | mitochondrion | 0.84 | 9.76 |
Protein Annotations
| EntrezGene:100383226 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A1D6DUQ4 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | ProteinID:ONM12540.1 | ProteinID:ONM12544.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF10 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000842DFD5 |
| EnsemblPlantsGene:Zm00001d001945 | EnsemblPlants:Zm00001d001945_P002 | EnsemblPlants:Zm00001d001945_T002 | SEG:seg | : | : |
Description
ARF-transcription factor 4Auxin response factor 4
Coordinates
chr2:+:3367272..3374233
Molecular Weight (calculated)
104299.0 Da
IEP (calculated)
6.189
GRAVY (calculated)
-0.451
Length
948 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTSSYEKAT SGVLRNAAAL LDEMQLMGET QGAKKVINSE LWHACAGPLV CLPQRGSLVY YFPQGHSEQV AATTKKIPNS RIPNYPSLPS QLLCQVHNIT
101: LHADKETDEI YAQMTLQPVH SETDVFPIPT LGAYTKSKHP SEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP NQELIVRDLH DNMWTFRHIY
201: RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF ISAKPPMTEK CWCRDEKSQL LVGVRRATRQ QPALSSSVLS TDSMHIGVLA AAAHAASSGG SFTVYYNPRT
301: SPSPFVIPLA RYNMATYLQP SVGMRFAMMF ETEESSKRRC TGTIVGISDY EPMRWPNSKW RNLQVEWDEH GYGERPERVS LWDIETPENM VFSSPLNSKR
401: QCLPSYGVSG LHVSSISKPQ GSPFGNLQHM PGISSDIALL LLNQSAQNLG SSIACQQSSF SSIIQNAKQS YFPPTTLGAS TGWNESQQQL NALGIQKGDQ
501: VSCDVQPGID SITAPEMNVK PRVPRSTDSY SSQSISDPNS KSDPKTKTRR SKKSSSHKTI SDKSEISSVP SQICDKQRHG SEPTSADFEA EQATCGNNED
601: SSGALTRGDF AGELQVQQVE QDGLLPPPKL ESSKSPDGGK SVSSFPNQGC FSQFFEGLDW MIPPSCYQDS NGIHSVTTSD SIFNPSEGIP PSTMNADGMD
701: AFQTSCLSEC FPNSIQEFIS SPDINTLTFM SPEMQHLDAQ HDGSNLQSTS NSYVQMSFSE ESQSASLSGL HMEAVHINSS CLQPLATGSF DAGTFSKLSN
801: IKECQALPLQ EIHNSSMGTP SCSMDAAAVE YCMDRSVKPL KPPVRTYTKV QKLGSVGRSI DVTRFRDYHE LRSAIACMFG LQGKLEHPGS SDWKLVYVDY
901: ENDVLLVGDD PWEEFINCVR CIRILAPSEV QQMSENGVHV LNDCMQMA
101: LHADKETDEI YAQMTLQPVH SETDVFPIPT LGAYTKSKHP SEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP NQELIVRDLH DNMWTFRHIY
201: RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF ISAKPPMTEK CWCRDEKSQL LVGVRRATRQ QPALSSSVLS TDSMHIGVLA AAAHAASSGG SFTVYYNPRT
301: SPSPFVIPLA RYNMATYLQP SVGMRFAMMF ETEESSKRRC TGTIVGISDY EPMRWPNSKW RNLQVEWDEH GYGERPERVS LWDIETPENM VFSSPLNSKR
401: QCLPSYGVSG LHVSSISKPQ GSPFGNLQHM PGISSDIALL LLNQSAQNLG SSIACQQSSF SSIIQNAKQS YFPPTTLGAS TGWNESQQQL NALGIQKGDQ
501: VSCDVQPGID SITAPEMNVK PRVPRSTDSY SSQSISDPNS KSDPKTKTRR SKKSSSHKTI SDKSEISSVP SQICDKQRHG SEPTSADFEA EQATCGNNED
601: SSGALTRGDF AGELQVQQVE QDGLLPPPKL ESSKSPDGGK SVSSFPNQGC FSQFFEGLDW MIPPSCYQDS NGIHSVTTSD SIFNPSEGIP PSTMNADGMD
701: AFQTSCLSEC FPNSIQEFIS SPDINTLTFM SPEMQHLDAQ HDGSNLQSTS NSYVQMSFSE ESQSASLSGL HMEAVHINSS CLQPLATGSF DAGTFSKLSN
801: IKECQALPLQ EIHNSSMGTP SCSMDAAAVE YCMDRSVKPL KPPVRTYTKV QKLGSVGRSI DVTRFRDYHE LRSAIACMFG LQGKLEHPGS SDWKLVYVDY
901: ENDVLLVGDD PWEEFINCVR CIRILAPSEV QQMSENGVHV LNDCMQMA
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.