Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16315 | Sorghum | cytosol | 84.78 | 79.92 |
| Os12t0601400-01 | Rice | nucleus | 63.91 | 74.62 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 66.09 | 71.03 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 66.09 | 71.03 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 66.09 | 71.03 |
| Zm00001d030993_P001 | Maize | nucleus | 59.13 | 68.34 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 33.91 | 62.4 |
| KRH34375 | Soybean | cytosol, nucleus | 32.17 | 60.66 |
| Zm00001d033319_P001 | Maize | nucleus | 56.96 | 57.96 |
| Zm00001d013707_P001 | Maize | nucleus | 56.09 | 57.59 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 42.61 | 57.31 |
| Zm00001d018973_P001 | Maize | nucleus | 49.13 | 55.94 |
| PGSC0003DMT400051896 | Potato | plastid | 36.96 | 55.56 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 37.39 | 55.13 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 44.35 | 54.84 |
| GSMUA_Achr11P... | Banana | nucleus | 40.87 | 54.02 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 46.52 | 53.77 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 44.35 | 53.68 |
| Solyc06g053840.2.1 | Tomato | nucleus | 44.35 | 53.68 |
| Solyc04g054280.1.1 | Tomato | nucleus | 38.7 | 53.61 |
| PGSC0003DMT400049677 | Potato | nucleus | 42.61 | 53.55 |
| CDX94876 | Canola | nucleus | 39.13 | 52.63 |
| Bra001899.1-P | Field mustard | nucleus | 39.13 | 52.63 |
| CDX92972 | Canola | nucleus | 39.13 | 52.63 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 40.87 | 52.22 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 42.17 | 52.15 |
| Solyc09g083280.2.1 | Tomato | nucleus | 44.35 | 52.04 |
| Zm00001d013071_P001 | Maize | nucleus | 40.87 | 51.93 |
| Solyc09g065850.2.1 | Tomato | nucleus | 41.74 | 51.89 |
| PGSC0003DMT400015655 | Potato | nucleus | 43.91 | 51.79 |
| AT4G14560.1 | Thale cress | nucleus | 37.83 | 51.79 |
| Bra032521.1-P | Field mustard | nucleus | 40.43 | 51.67 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 57.39 | 51.56 |
| KRH71338 | Soybean | nucleus | 45.22 | 51.49 |
| Bra023771.1-P | Field mustard | nucleus | 38.26 | 51.46 |
| CDY35493 | Canola | nucleus | 38.26 | 51.46 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 42.61 | 51.31 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 37.39 | 51.19 |
| CDY10692 | Canola | nucleus | 38.26 | 51.16 |
| Bra033890.1-P | Field mustard | nucleus | 38.26 | 51.16 |
| CDY10069 | Canola | nucleus | 40.87 | 51.09 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 41.3 | 51.08 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 41.3 | 51.08 |
| CDY40837 | Canola | nucleus | 37.83 | 50.88 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.17 | 50.79 |
| Bra027504.1-P | Field mustard | nucleus | 42.17 | 50.79 |
| CDY10346 | Canola | nucleus | 37.83 | 50.58 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 40.87 | 50.54 |
| CDY36883 | Canola | nucleus | 37.39 | 50.0 |
| KRG92430 | Soybean | nucleus | 41.74 | 49.48 |
| KRH69048 | Soybean | nucleus | 41.3 | 49.48 |
| CDY53735 | Canola | nucleus | 36.96 | 49.42 |
| Bra039732.1-P | Field mustard | nucleus | 36.09 | 48.54 |
| PGSC0003DMT400013662 | Potato | cytosol | 40.0 | 48.42 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 34.35 | 48.17 |
| Solyc06g008580.2.1 | Tomato | nucleus | 39.13 | 47.37 |
| KRH32098 | Soybean | nucleus | 34.78 | 45.98 |
| KRH67288 | Soybean | nucleus | 40.87 | 45.63 |
| KRG95613 | Soybean | nucleus | 40.0 | 45.1 |
| Zm00001d036918_P001 | Maize | nucleus | 32.61 | 37.88 |
| Zm00001d013302_P002 | Maize | nucleus | 37.39 | 37.72 |
| Zm00001d033976_P002 | Maize | nucleus | 38.7 | 37.55 |
| Zm00001d037774_P001 | Maize | cytosol | 39.13 | 36.89 |
| Zm00001d039624_P001 | Maize | nucleus | 35.22 | 36.82 |
| Zm00001d008749_P002 | Maize | cytosol | 33.48 | 35.16 |
| AT3G23030.2 | Thale cress | vacuole | 39.13 | 34.48 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 43.04 | 34.26 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 35.65 | 30.48 |
| Zm00001d009532_P001 | Maize | nucleus | 36.96 | 30.25 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 36.96 | 29.41 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 40.87 | 29.38 |
| Zm00001d041416_P001 | Maize | nucleus | 42.17 | 28.2 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 38.26 | 26.75 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 35.65 | 24.05 |
| Zm00001d024008_P001 | Maize | mitochondrion | 28.7 | 18.97 |
Protein Annotations
| EntrezGene:100192924 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:B4FD48 |
| EMBL:BT035036 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | EMBL:KJ727623 | ProteinID:ONM32958.1 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF8 | SUPFAM:SSF54277 | UniParc:UPI00017B65E8 | EnsemblPlantsGene:Zm00001d041418 |
| EnsemblPlants:Zm00001d041418_P001 | EnsemblPlants:Zm00001d041418_T001 | SEG:seg | : | : | : |
Description
Aux/IAA-transcription factor 11Auxin-responsive protein IAA4
Coordinates
chr3:+:118360550..118362225
Molecular Weight (calculated)
24494.9 Da
IEP (calculated)
5.218
GRAVY (calculated)
-0.489
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAAASAAS YGFKADDDVD SLRATELRLG LPGTEEKEEA EEPQHKAAPP PPSTPRGKKR DVVASSGPED APKKRDCETD ADADAAPPPA AKAQLVGWPP
101: VRSYRKSCFQ QQAAAKNKPA AALAEEAPAA GGLFVKVSMD GAPYLRKVDL KMYKGYRELR EALEAMFLCF SGAADAPAVN PSDFAVTYED KDGDLMLVGD
201: VPFGMFISTC KRLRIMKGSE ARGLGSAKNN
101: VRSYRKSCFQ QQAAAKNKPA AALAEEAPAA GGLFVKVSMD GAPYLRKVDL KMYKGYRELR EALEAMFLCF SGAADAPAVN PSDFAVTYED KDGDLMLVGD
201: VPFGMFISTC KRLRIMKGSE ARGLGSAKNN
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.