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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX75834
CDX80545
CDX82428
CDX83741
CDX83778
CDX87072
CDX87863
CDX88204
CDX89844
CDX92437
CDX96672
CDY01393
CDY08767
CDY16560
CDY18205
CDY18679
CDY19790
CDY20135
CDY21111
CDY21845
CDY22876
CDY26690
CDY27511
CDY29392
CDY30017
CDY32934
CDY33844
CDY36883
CDY39348
CDY41030
CDY41894
CDY45069
CDY45607
CDY46538
CDY48005
CDY50750
CDY53439
CDY53735
CDY61164
CDY62586
CDY68170
CDY69497
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43700.1 CDX89844 AT1G04100.1 21734647
AT5G43700.1 CDY18205 AT1G04100.1 21734647
AT5G43700.1 CDX89844 AT1G04100.1 21798944
AT5G43700.1 CDY18205 AT1G04100.1 21798944
AT5G43700.1 CDX83778 AT1G19220.1 21734647
AT5G43700.1 CDX96672 AT1G19220.1 21734647
AT5G43700.1 CDY26690 AT1G19220.1 21734647
AT5G43700.1 CDY41030 AT1G19220.1 21734647
AT5G43700.1 CDX83741 AT1G19850.1 21734647
AT5G43700.1 CDY01393 AT1G19850.1 21734647
AT5G43700.1 CDY29392 AT1G19850.1 21734647
AT5G43700.1 CDY39348 AT1G19850.1 21734647
AT5G43700.1 CDY61164 AT1G19850.1 21734647
AT5G43700.1 CDY62586 AT1G19850.1 21734647
AT5G43700.1 CDX87863 AT1G51950.1 21734647
AT5G43700.1 CDY22876 AT1G51950.1 21734647
AT5G43700.1 CDY33844 AT1G51950.1 21734647
AT5G43700.1 CDY46538 AT1G51950.1 21734647
AT5G43700.1 CDY53439 AT1G51950.1 21734647
AT5G43700.1 CDY27511 AT2G46990.1 21734647
AT5G43700.1 CDY48005 AT2G46990.1 21734647
AT5G43700.1 CDY21111 AT3G04730.1 21734647
AT5G43700.1 CDY30017 AT3G04730.1 21734647
AT5G43700.1 CDY41894 AT3G04730.1 21734647
AT5G43700.1 CDY50750 AT3G04730.1 21734647
AT5G43700.1 CDX75834 AT3G15540.1 21734647
AT5G43700.1 CDX82428 AT3G15540.1 21734647
AT5G43700.1 CDY20135 AT3G15540.1 21734647
AT5G43700.1 CDY21845 AT3G15540.1 21734647
AT5G43700.1 CDY71748 AT3G15540.1 21734647
AT5G43700.1 CDY36883 AT4G14560.1 9342315
AT5G43700.1 CDY53735 AT4G14560.1 9342315
AT5G43700.1 CDX92437 AT5G20730.1 21734647
AT5G43700.1 CDY16560 AT5G20730.1 21734647
AT5G43700.1 CDY45069 AT5G20730.1 21734647
AT5G43700.1 CDX80545 AT5G25890.1 21734647
AT5G43700.1 CDX87072 AT5G25890.1 21734647
AT5G43700.1 CDX88204 AT5G25890.1 21734647
AT5G43700.1 CDY19790 AT5G25890.1 21734647
AT5G43700.1 CDY32934 AT5G43700.1 21734647
AT5G43700.1 CDY69497 AT5G43700.1 21734647
AT5G43700.1 CDY08767 AT5G65670.1 21734647
AT5G43700.1 CDY18679 AT5G65670.1 21734647
AT5G43700.1 CDY45607 AT5G65670.1 21734647
AT5G43700.1 CDY68170 AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32934 Canola cytosol, nucleus, plastid 98.43 98.43
Bra027504.1-P Field mustard nucleus 96.86 96.86
AT5G43700.1 Thale cress cytosol, extracellular, nucleus 85.34 87.63
KRH34375 Soybean cytosol, nucleus 48.17 75.41
CDX89833 Canola cytosol, nucleus, plastid 73.3 75.27
CDY32536 Canola cytosol, nucleus, plastid 70.68 75.0
CDY18213 Canola cytosol, nucleus, plastid 71.2 73.12
CDY10069 Canola nucleus 69.63 72.28
CDX94876 Canola nucleus 61.26 68.42
CDY35493 Canola nucleus 61.26 68.42
CDX92972 Canola nucleus 60.73 67.84
CDY40837 Canola nucleus 60.73 67.84
CDY10692 Canola nucleus 60.21 66.86
CDY10346 Canola nucleus 59.69 66.28
Solyc09g083280.2.1 Tomato nucleus 67.54 65.82
PGSC0003DMT400015655 Potato nucleus 67.02 65.64
PGSC0003DMT400042074 Potato cytosol, nucleus, plastid 64.92 65.26
Solyc06g053840.2.1 Tomato nucleus 64.92 65.26
KRG92430 Soybean nucleus 65.44 64.43
CDY36883 Canola nucleus 56.54 62.79
VIT_05s0020g04680.t01 Wine grape nucleus 54.97 62.5
KRH69048 Soybean nucleus 62.3 61.98
CDY53735 Canola nucleus 55.5 61.63
GSMUA_Achr9P10690_001 Banana cytosol, mitochondrion, nucleus 42.93 60.29
Solyc04g054280.1.1 Tomato nucleus 51.83 59.64
GSMUA_Achr5P03110_001 Banana nucleus 52.36 59.52
PGSC0003DMT400034978 Potato cytosol, mitochondrion, nucleus 50.26 58.54
GSMUA_Achr4P05200_001 Banana mitochondrion 37.7 57.6
GSMUA_Achr4P22530_001 Banana nucleus 53.4 56.35
GSMUA_Achr9P24330_001 Banana nucleus 49.74 55.56
GSMUA_Achr11P... Banana nucleus 49.74 54.6
GSMUA_Achr8P20620_001 Banana nucleus 51.83 52.66
GSMUA_Achr4P21030_001 Banana nucleus 53.93 52.02
Os12t0601400-01 Rice nucleus 50.26 48.73
GSMUA_Achr2P12630_001 Banana nucleus 51.31 48.28
CDY53305 Canola cytosol 39.27 47.77
EER98076 Sorghum cytosol, mitochondrion, nucleus 49.21 47.24
CDY10694 Canola mitochondrion 42.41 46.55
TraesCS5D01G449400.1 Wheat nucleus 43.46 45.86
TraesCS5B01G446100.1 Wheat cytosol, mitochondrion, nucleus 42.41 45.76
Zm00001d018973_P001 Maize nucleus 48.17 45.54
TraesCS5D01G069200.1 Wheat cytosol 50.79 45.33
TraesCS5B01G058800.1 Wheat cytosol 50.79 45.33
TraesCS5A01G058700.1 Wheat cytosol 50.79 45.33
Zm00001d013071_P001 Maize nucleus 41.88 44.2
CDX82428 Canola cytosol, nucleus, plastid 44.5 43.81
CDX75834 Canola cytosol, nucleus, plastid 44.5 43.81
EER93778 Sorghum cytosol, nucleus, plastid 51.31 43.36
CDY21845 Canola cytosol, extracellular, nucleus 44.5 43.15
CDY20135 Canola cytosol, nucleus, plastid 44.5 43.15
EER90734 Sorghum cytosol, nucleus, plastid 41.88 43.01
Zm00001d013707_P001 Maize nucleus 50.26 42.86
CDY41894 Canola cytosol, nucleus, plastid 51.83 42.86
CDX92973 Canola cytosol, nucleus, plastid 52.88 42.62
Zm00001d041418_P001 Maize nucleus 51.31 42.61
CDX89832 Canola nucleus 49.74 42.41
CDY21111 Canola cytosol, nucleus, plastid 52.36 42.37
CDY18214 Canola nucleus 49.21 41.96
CDY15493 Canola cytosol, nucleus, plastid 50.26 41.92
TraesCS5D01G388200.1 Wheat nucleus 47.12 41.86
CDY68807 Canola nucleus 42.93 41.84
CDY26042 Canola nucleus 42.93 41.84
CDY30017 Canola cytosol, nucleus, plastid 51.83 41.77
CDY32537 Canola nucleus 49.74 41.67
CDY10068 Canola cytosol, nucleus, plastid 49.74 41.67
Zm00001d033319_P001 Maize nucleus 49.21 41.59
TraesCS5B01G381800.1 Wheat nucleus 46.07 41.51
CDY47148 Canola nucleus 50.26 41.2
CDY62130 Canola cytosol, nucleus, plastid 50.26 41.2
Os03t0633800-01 Rice nucleus 48.69 41.15
CDY63910 Canola cytosol, nucleus, plastid 51.31 40.83
CDY30781 Canola cytosol, nucleus, plastid 51.31 40.83
Os07t0182400-01 Rice plastid 46.6 40.64
Os03t0797800-01 Rice nucleus 41.88 40.61
EES16315 Sorghum cytosol 51.31 40.16
TraesCS5A01G378200.1 Wheat nucleus 44.5 40.09
CDY71748 Canola cytosol, nucleus, plastid 36.13 39.88
CDY10349 Canola endoplasmic reticulum, extracellular 51.31 39.84
CDY40881 Canola cytosol 37.7 39.34
Zm00001d030993_P001 Maize nucleus 39.79 38.19
CDY06836 Canola nucleus 49.74 37.7
HORVU5Hr1G106350.2 Barley plastid 43.98 37.33
CDY53800 Canola nucleus 36.65 37.23
CDY50113 Canola cytosol, nucleus, plastid 32.98 34.81
CDY25617 Canola nucleus 48.17 34.59
CDY50750 Canola nucleus, plastid 52.36 34.36
CDX89499 Canola nucleus 47.64 33.58
HORVU5Hr1G014290.1 Barley mitochondrion 43.46 32.42
CDY37837 Canola mitochondrion 45.55 29.39
HORVU5Hr1G093640.1 Barley mitochondrion 48.17 29.3
CDY68170 Canola nucleus, plastid 47.12 28.94
CDY18679 Canola plastid 47.12 28.85
CDY66936 Canola cytosol, nucleus, plastid 41.36 28.62
CDY45607 Canola cytosol, nucleus, plastid 46.6 27.05
CDY08767 Canola cytosol, nucleus, plastid 46.6 26.81
Zm00001d034463_P001 Maize extracellular, golgi 41.36 24.69
CDY63072 Canola nucleus 49.21 23.62
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1GO:A0A078JVF2UniProt:A0A078JVF2InterPro:AUX/IAA_domInterPro:AUX_IAA
EnsemblPlants:CDY69497ProteinID:CDY69497ProteinID:CDY69497.1GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00088178001InterPro:IPR000270InterPro:PB1_dom
PFAM:PF02309PFscan:PS51745PANTHER:PTHR31734PANTHER:PTHR31734:SF11SUPFAM:SSF54277UniParc:UPI0004EF3BE3
Description
BnaCnng63870DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVF2]
Coordinates
chrLK039564:-:2354..3571
Molecular Weight (calculated)
21567.7 Da
IEP (calculated)
5.523
GRAVY (calculated)
-0.724
Length
191 amino acids
Sequence
(BLAST)
001: MENVGVCDEF VNLKATELRL GLPGTEDGGE EERQKVSCCK SNKRAFPETE KDIESTGKAE TASPPKAQIV GWPPVRSYRK NNIQTKKNES EGQGMYVKVS
101: MDGAPYLRKI DLTVYKQYPE LMKSLENMFK FSVGKYCERE GYKDSEFVPT YEDKDGDWML VGDVPWEMFV SSCKRLRIMK GSEAKGLGCG V
Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
Arabidopsis Description
IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.