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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra002327.1-P
Bra009867.1-P
Bra012190.1-P
Bra014303.1-P
Bra015289.1-P
Bra016492.1-P
Bra016517.1-P
Bra018938.1-P
Bra020125.1-P
Bra021117.1-P
Bra024406.1-P
Bra025720.1-P
Bra025775.1-P
Bra027232.1-P
Bra027504.1-P
Bra036557.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43700.1 Bra015289.1-P AT1G04100.1 21734647
AT5G43700.1 Bra015289.1-P AT1G04100.1 21798944
AT5G43700.1 Bra016517.1-P AT1G19220.1 21734647
AT5G43700.1 Bra025720.1-P AT1G19220.1 21734647
AT5G43700.1 Bra012190.1-P AT1G19850.1 21734647
AT5G43700.1 Bra016492.1-P AT1G19850.1 21734647
AT5G43700.1 Bra025775.1-P AT1G19850.1 21734647
AT5G43700.1 Bra014303.1-P AT1G51950.1 21734647
AT5G43700.1 Bra018938.1-P AT1G51950.1 21734647
AT5G43700.1 Bra040476.1-P AT2G46990.1 21734647
AT5G43700.1 Bra040122.1-P AT3G04730.1 21734647
AT5G43700.1 Bra040398.1-P AT3G04730.1 21734647
AT5G43700.1 Bra001598.1-P AT3G15540.1 21734647
AT5G43700.1 Bra021117.1-P AT3G15540.1 21734647
AT5G43700.1 Bra027232.1-P AT3G15540.1 21734647
AT5G43700.1 Bra039732.1-P AT4G14560.1 9342315
AT5G43700.1 Bra002327.1-P AT5G20730.1 21734647
AT5G43700.1 Bra020125.1-P AT5G20730.1 21734647
AT5G43700.1 Bra009867.1-P AT5G25890.1 21734647
AT5G43700.1 Bra036557.1-P AT5G25890.1 21734647
AT5G43700.1 Bra027504.1-P AT5G43700.1 21734647
AT5G43700.1 Bra024406.1-P AT5G65670.1 21734647
AT5G43700.1 Bra037824.1-P AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32934 Canola cytosol, nucleus, plastid 98.43 98.43
CDY69497 Canola cytosol, nucleus, plastid 96.86 96.86
AT5G43700.1 Thale cress cytosol, extracellular, nucleus 85.34 87.63
KRH34375 Soybean cytosol, nucleus 48.69 76.23
Bra015297.1-P Field mustard cytosol, nucleus, plastid 72.77 74.73
Bra032521.1-P Field mustard nucleus 69.11 73.33
Bra023771.1-P Field mustard nucleus 61.78 69.01
Bra001899.1-P Field mustard nucleus 61.26 68.42
Bra033890.1-P Field mustard nucleus 60.21 66.86
Solyc09g083280.2.1 Tomato nucleus 68.06 66.33
PGSC0003DMT400015655 Potato nucleus 67.54 66.15
PGSC0003DMT400042074 Potato cytosol, nucleus, plastid 65.44 65.79
Solyc06g053840.2.1 Tomato nucleus 65.44 65.79
KRG92430 Soybean nucleus 65.44 64.43
KRH69048 Soybean nucleus 63.35 63.02
VIT_05s0020g04680.t01 Wine grape nucleus 54.45 61.9
Bra039732.1-P Field mustard nucleus 54.45 60.82
GSMUA_Achr9P10690_001 Banana cytosol, mitochondrion, nucleus 42.93 60.29
Solyc04g054280.1.1 Tomato nucleus 51.83 59.64
GSMUA_Achr5P03110_001 Banana nucleus 52.36 59.52
PGSC0003DMT400034978 Potato cytosol, mitochondrion, nucleus 50.79 59.15
GSMUA_Achr4P05200_001 Banana mitochondrion 37.7 57.6
GSMUA_Achr4P22530_001 Banana nucleus 53.4 56.35
GSMUA_Achr11P... Banana nucleus 49.74 54.6
GSMUA_Achr9P24330_001 Banana nucleus 48.69 54.39
GSMUA_Achr8P20620_001 Banana nucleus 51.31 52.13
GSMUA_Achr4P21030_001 Banana nucleus 53.93 52.02
Os12t0601400-01 Rice nucleus 50.26 48.73
GSMUA_Achr2P12630_001 Banana nucleus 51.31 48.28
Bra026755.1-P Field mustard nucleus 39.27 48.08
EER98076 Sorghum cytosol, mitochondrion, nucleus 49.74 47.74
TraesCS5B01G446100.1 Wheat cytosol, mitochondrion, nucleus 41.88 45.2
Zm00001d018973_P001 Maize nucleus 47.64 45.05
TraesCS5A01G058700.1 Wheat cytosol 50.26 44.86
TraesCS5D01G069200.1 Wheat cytosol 50.26 44.86
TraesCS5B01G058800.1 Wheat cytosol 50.26 44.86
TraesCS5D01G449400.1 Wheat nucleus 42.41 44.75
Zm00001d013071_P001 Maize nucleus 42.41 44.75
Bra040122.1-P Field mustard nucleus 51.83 44.0
Bra001598.1-P Field mustard nucleus 44.5 43.81
EER90734 Sorghum cytosol, nucleus, plastid 42.41 43.55
Bra021117.1-P Field mustard cytosol, nucleus, plastid 44.5 43.15
Bra040398.1-P Field mustard nucleus 51.83 42.86
EER93778 Sorghum cytosol, nucleus, plastid 50.26 42.48
Bra027232.1-P Field mustard nucleus 42.93 42.27
Zm00001d041418_P001 Maize nucleus 50.79 42.17
Zm00001d013707_P001 Maize nucleus 49.21 41.96
Bra001900.1-P Field mustard cytosol, nucleus, plastid 51.83 41.77
Bra015298.1-P Field mustard nucleus 48.17 41.07
Bra030560.1-P Field mustard nucleus 49.21 41.05
Bra033886.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 51.83 40.91
Bra039855.1-P Field mustard nucleus 49.74 40.77
Os03t0633800-01 Rice nucleus 48.17 40.71
Os03t0797800-01 Rice nucleus 41.88 40.61
Bra032520.1-P Field mustard nucleus 48.17 40.53
TraesCS5D01G388200.1 Wheat nucleus 45.55 40.47
Bra018993.1-P Field mustard nucleus 42.93 40.39
Zm00001d033319_P001 Maize nucleus 47.64 40.27
TraesCS5B01G381800.1 Wheat nucleus 44.5 40.09
EES16315 Sorghum cytosol 50.79 39.75
Os07t0182400-01 Rice plastid 45.55 39.73
TraesCS5A01G378200.1 Wheat nucleus 43.98 39.62
Bra037824.1-P Field mustard plastid 38.74 37.95
Zm00001d030993_P001 Maize nucleus 39.27 37.69
HORVU5Hr1G106350.2 Barley plastid 43.46 36.89
Bra011082.1-P Field mustard nucleus 52.88 34.83
Bra030219.1-P Field mustard nucleus 48.17 34.59
Bra024406.1-P Field mustard nucleus 40.84 33.48
HORVU5Hr1G014290.1 Barley mitochondrion 42.41 31.64
Bra031850.1-P Field mustard mitochondrion 45.03 29.45
HORVU5Hr1G093640.1 Barley mitochondrion 47.12 28.66
Zm00001d034463_P001 Maize extracellular, golgi 41.88 25.0
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra027504EnsemblPlants:Bra027504.1
EnsemblPlants:Bra027504.1-PGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009733GO:GO:0009734GO:GO:0009987GO:GO:0043565GO:GO:0044212
InterPro:IPR000270UniProt:M4EFE2InterPro:PB1_domPFAM:PF02309PFscan:PS51745PANTHER:PTHR31734
PANTHER:PTHR31734:SF11SUPFAM:SSF54277UniParc:UPI000254283B:::
Description
AT5G43700 (E=6e-090) ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor
Coordinates
chrA09:-:13774194..13774948
Molecular Weight (calculated)
21634.9 Da
IEP (calculated)
7.713
GRAVY (calculated)
-0.747
Length
191 amino acids
Sequence
(BLAST)
001: MENVGVCDEF VNLKATELRL GLPGTEDGGE EERQKVSCCK SNKRAFPETE KDIESTGKTK PASPPKAQIV GWPPVRSYRK NNIQTKKNES EGQGMYVKVS
101: MDGAPYLRKI DLTVYKQYPE LMKSLENMFK FSVGEYCERE RYKGSEFVPT YEDKDGDWML VGDVPWEMFV SSCKRLRIMK GSEAKGLGCG V
Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
Arabidopsis Description
IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.