Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G449400.1 | Wheat | nucleus | 72.0 | 89.5 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 70.22 | 89.27 |
| Zm00001d013071_P001 | Maize | nucleus | 56.0 | 69.61 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 57.33 | 69.35 |
| Os03t0797800-01 | Rice | nucleus | 60.44 | 69.04 |
| KRH34375 | Soybean | cytosol, nucleus | 30.67 | 56.56 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 30.67 | 55.2 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 34.22 | 49.36 |
| PGSC0003DMT400051896 | Potato | plastid | 33.33 | 49.02 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 39.11 | 47.31 |
| Solyc04g054280.1.1 | Tomato | nucleus | 34.67 | 46.99 |
| AT4G14560.1 | Thale cress | nucleus | 34.67 | 46.43 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 40.89 | 46.23 |
| CDX92972 | Canola | nucleus | 35.11 | 46.2 |
| CDX94876 | Canola | nucleus | 35.11 | 46.2 |
| Bra001899.1-P | Field mustard | nucleus | 35.11 | 46.2 |
| CDY40837 | Canola | nucleus | 35.11 | 46.2 |
| CDY35493 | Canola | nucleus | 34.67 | 45.61 |
| Bra023771.1-P | Field mustard | nucleus | 34.67 | 45.61 |
| CDY10692 | Canola | nucleus | 34.67 | 45.35 |
| CDY53735 | Canola | nucleus | 34.67 | 45.35 |
| Bra033890.1-P | Field mustard | nucleus | 34.67 | 45.35 |
| CDY10346 | Canola | nucleus | 34.22 | 44.77 |
| Solyc06g053840.2.1 | Tomato | nucleus | 37.78 | 44.74 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 33.78 | 44.44 |
| Solyc09g065850.2.1 | Tomato | nucleus | 36.44 | 44.32 |
| PGSC0003DMT400049677 | Potato | nucleus | 36.0 | 44.26 |
| CDY36883 | Canola | nucleus | 33.78 | 44.19 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 37.33 | 43.98 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 36.89 | 43.68 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 36.89 | 43.46 |
| Bra027504.1-P | Field mustard | nucleus | 36.89 | 43.46 |
| Solyc09g083280.2.1 | Tomato | nucleus | 37.78 | 43.37 |
| Bra032521.1-P | Field mustard | nucleus | 34.67 | 43.33 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 34.67 | 43.33 |
| Bra039732.1-P | Field mustard | nucleus | 32.89 | 43.27 |
| PGSC0003DMT400015655 | Potato | nucleus | 37.33 | 43.08 |
| KRH71338 | Soybean | nucleus | 38.67 | 43.07 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 35.56 | 43.01 |
| CDY10069 | Canola | nucleus | 35.11 | 42.93 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 60.89 | 42.81 |
| KRG92430 | Soybean | nucleus | 36.89 | 42.78 |
| KRH69048 | Soybean | nucleus | 36.44 | 42.71 |
| KRH32098 | Soybean | nucleus | 32.89 | 42.53 |
| GSMUA_Achr11P... | Banana | nucleus | 32.89 | 42.53 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 35.11 | 42.47 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 35.11 | 42.47 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 31.56 | 42.26 |
| KRH67288 | Soybean | nucleus | 38.67 | 42.23 |
| Solyc06g008580.2.1 | Tomato | nucleus | 35.56 | 42.11 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 34.67 | 41.94 |
| PGSC0003DMT400013662 | Potato | cytosol | 35.11 | 41.58 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 30.22 | 41.46 |
| KRG95613 | Soybean | nucleus | 37.33 | 41.18 |
| HORVU3Hr1G031460.1 | Barley | cytosol | 35.11 | 34.35 |
| HORVU7Hr1G084940.3 | Barley | plastid | 28.0 | 33.51 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 29.33 | 33.0 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 34.67 | 32.91 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 36.89 | 32.42 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 43.11 | 30.89 |
| AT3G23030.2 | Thale cress | vacuole | 35.56 | 30.65 |
| HORVU0Hr1G021630.1 | Barley | cytosol, mitochondrion, nucleus | 24.89 | 30.43 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 33.78 | 29.23 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 36.0 | 28.03 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 33.78 | 27.54 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 25.78 | 26.85 |
| HORVU3Hr1G088810.1 | Barley | plastid | 28.0 | 26.58 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 32.44 | 25.98 |
| HORVU1Hr1G086070.6 | Barley | plastid | 34.67 | 24.92 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287SM31 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G106350 |
| EnsemblPlants:HORVU5Hr1G106350.2 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF14 | SUPFAM:SSF54277 | UniParc:UPI000B463428 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287SM31]
Coordinates
chrchr5H:-:623919876..623921292
Molecular Weight (calculated)
23475.4 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.457
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: KRSNAHTSTS TTRHATWPSS ASTIRPSRLT HFSFPGRPSM EIIDAELRLG PPGSGGGDGG FGASSAAQKK RPSSTVAAAA SEASGTDDHD AAPASKVQVV
101: GWPPVGAYRK STFQSAAAKE SKGAGEAGSK RSAGGGGGLY VKVSMDGAPY LRKVDLRTYG GYRELRAALD ALFGCFSSCS SPDNAPFAMA YEDKDGDLML
201: AGDVPWDMFI SSCKRLRIMK SSEAR
101: GWPPVGAYRK STFQSAAAKE SKGAGEAGSK RSAGGGGGLY VKVSMDGAPY LRKVDLRTYG GYRELRAALD ALFGCFSSCS SPDNAPFAMA YEDKDGDLML
201: AGDVPWDMFI SSCKRLRIMK SSEAR
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.