CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75834
CDX80545
CDX82428
CDX83741
CDX83778
CDX87072
CDX87863
CDX88204
CDX89844
CDX92437
CDX96672
CDY01393
CDY08767
CDY16560
CDY18205
CDY18679
CDY19790
CDY20135
CDY21111
CDY21845
CDY22876
CDY26690
CDY27511
CDY29392
CDY30017
CDY32934
CDY33844
CDY36883
CDY39348
CDY41030
CDY41894
CDY45069
CDY45607
CDY46538
CDY48005
CDY50750
CDY53439
CDY53735
CDY61164
CDY62586
CDY68170
CDY69497
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43700.1	CDX89844	AT1G04100.1	21734647
AT5G43700.1	CDY18205	AT1G04100.1	21734647
AT5G43700.1	CDX89844	AT1G04100.1	21798944
AT5G43700.1	CDY18205	AT1G04100.1	21798944
AT5G43700.1	CDX83778	AT1G19220.1	21734647
AT5G43700.1	CDX96672	AT1G19220.1	21734647
AT5G43700.1	CDY26690	AT1G19220.1	21734647
AT5G43700.1	CDY41030	AT1G19220.1	21734647
AT5G43700.1	CDX83741	AT1G19850.1	21734647
AT5G43700.1	CDY01393	AT1G19850.1	21734647
AT5G43700.1	CDY29392	AT1G19850.1	21734647
AT5G43700.1	CDY39348	AT1G19850.1	21734647
AT5G43700.1	CDY61164	AT1G19850.1	21734647
AT5G43700.1	CDY62586	AT1G19850.1	21734647
AT5G43700.1	CDX87863	AT1G51950.1	21734647
AT5G43700.1	CDY22876	AT1G51950.1	21734647
AT5G43700.1	CDY33844	AT1G51950.1	21734647
AT5G43700.1	CDY46538	AT1G51950.1	21734647
AT5G43700.1	CDY53439	AT1G51950.1	21734647
AT5G43700.1	CDY27511	AT2G46990.1	21734647
AT5G43700.1	CDY48005	AT2G46990.1	21734647
AT5G43700.1	CDY21111	AT3G04730.1	21734647
AT5G43700.1	CDY30017	AT3G04730.1	21734647
AT5G43700.1	CDY41894	AT3G04730.1	21734647
AT5G43700.1	CDY50750	AT3G04730.1	21734647
AT5G43700.1	CDX75834	AT3G15540.1	21734647
AT5G43700.1	CDX82428	AT3G15540.1	21734647
AT5G43700.1	CDY20135	AT3G15540.1	21734647
AT5G43700.1	CDY21845	AT3G15540.1	21734647
AT5G43700.1	CDY71748	AT3G15540.1	21734647
AT5G43700.1	CDY36883	AT4G14560.1	9342315
AT5G43700.1	CDY53735	AT4G14560.1	9342315
AT5G43700.1	CDX92437	AT5G20730.1	21734647
AT5G43700.1	CDY16560	AT5G20730.1	21734647
AT5G43700.1	CDY45069	AT5G20730.1	21734647
AT5G43700.1	CDX80545	AT5G25890.1	21734647
AT5G43700.1	CDX87072	AT5G25890.1	21734647
AT5G43700.1	CDX88204	AT5G25890.1	21734647
AT5G43700.1	CDY19790	AT5G25890.1	21734647
AT5G43700.1	CDY32934	AT5G43700.1	21734647
AT5G43700.1	CDY69497	AT5G43700.1	21734647
AT5G43700.1	CDY08767	AT5G65670.1	21734647
AT5G43700.1	CDY18679	AT5G65670.1	21734647
AT5G43700.1	CDY45607	AT5G65670.1	21734647
AT5G43700.1	CDY68170	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027504.1-P	Field mustard	nucleus	98.43	98.43
CDY69497	Canola	cytosol, nucleus, plastid	98.43	98.43
AT5G43700.1	Thale cress	cytosol, extracellular, nucleus	86.91	89.25
KRH34375	Soybean	cytosol, nucleus	49.21	77.05
CDX89833	Canola	cytosol, nucleus, plastid	74.35	76.34
CDY32536	Canola	cytosol, nucleus, plastid	71.73	76.11
CDY18213	Canola	cytosol, nucleus, plastid	72.77	74.73
CDY10069	Canola	nucleus	70.68	73.37
CDY35493	Canola	nucleus	62.3	69.59
CDX94876	Canola	nucleus	62.3	69.59
CDY40837	Canola	nucleus	61.78	69.01
CDX92972	Canola	nucleus	61.78	69.01
CDY10692	Canola	nucleus	61.26	68.02
CDY10346	Canola	nucleus	60.73	67.44
Solyc09g083280.2.1	Tomato	nucleus	68.59	66.84
PGSC0003DMT400015655	Potato	nucleus	68.06	66.67
Solyc06g053840.2.1	Tomato	nucleus	65.97	66.32
PGSC0003DMT400042074	Potato	cytosol, nucleus, plastid	65.97	66.32
KRG92430	Soybean	nucleus	67.02	65.98
CDY36883	Canola	nucleus	57.59	63.95
VIT_05s0020g04680.t01	Wine grape	nucleus	55.5	63.1
KRH69048	Soybean	nucleus	63.35	63.02
CDY53735	Canola	nucleus	56.54	62.79
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	43.46	61.03
Solyc04g054280.1.1	Tomato	nucleus	52.36	60.24
GSMUA_Achr5P03110_001	Banana	nucleus	52.88	60.12
PGSC0003DMT400034978	Potato	cytosol, mitochondrion, nucleus	51.31	59.76
GSMUA_Achr4P05200_001	Banana	mitochondrion	37.7	57.6
GSMUA_Achr4P22530_001	Banana	nucleus	53.93	56.91
GSMUA_Achr9P24330_001	Banana	nucleus	49.74	55.56
GSMUA_Achr11P...	Banana	nucleus	49.74	54.6
GSMUA_Achr8P20620_001	Banana	nucleus	52.36	53.19
GSMUA_Achr4P21030_001	Banana	nucleus	54.45	52.53
GSMUA_Achr2P12630_001	Banana	nucleus	51.83	48.77
Os12t0601400-01	Rice	nucleus	50.26	48.73
CDY53305	Canola	cytosol	39.27	47.77
EER98076	Sorghum	cytosol, mitochondrion, nucleus	49.74	47.74
CDY10694	Canola	mitochondrion	42.41	46.55
Zm00001d018973_P001	Maize	nucleus	48.17	45.54
TraesCS5D01G069200.1	Wheat	cytosol	50.79	45.33
TraesCS5A01G058700.1	Wheat	cytosol	50.79	45.33
TraesCS5B01G058800.1	Wheat	cytosol	50.79	45.33
TraesCS5D01G449400.1	Wheat	nucleus	42.93	45.3
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	41.88	45.2
Zm00001d013071_P001	Maize	nucleus	42.41	44.75
CDX82428	Canola	cytosol, nucleus, plastid	45.03	44.33
CDX75834	Canola	cytosol, nucleus, plastid	45.03	44.33
CDY21845	Canola	cytosol, extracellular, nucleus	45.03	43.65
CDY20135	Canola	cytosol, nucleus, plastid	45.03	43.65
EER90734	Sorghum	cytosol, nucleus, plastid	42.41	43.55
CDY41894	Canola	cytosol, nucleus, plastid	52.36	43.29
EER93778	Sorghum	cytosol, nucleus, plastid	50.79	42.92
CDY21111	Canola	cytosol, nucleus, plastid	52.88	42.8
CDX92973	Canola	cytosol, nucleus, plastid	52.88	42.62
Zm00001d013707_P001	Maize	nucleus	49.74	42.41
CDX89832	Canola	nucleus	49.74	42.41
CDY68807	Canola	nucleus	43.46	42.35
CDY26042	Canola	nucleus	43.46	42.35
CDY30017	Canola	cytosol, nucleus, plastid	52.36	42.19
Zm00001d041418_P001	Maize	nucleus	50.79	42.17
CDY18214	Canola	nucleus	49.21	41.96
CDY15493	Canola	cytosol, nucleus, plastid	50.26	41.92
TraesCS5D01G388200.1	Wheat	nucleus	47.12	41.86
CDY32537	Canola	nucleus	49.74	41.67
CDY10068	Canola	cytosol, nucleus, plastid	49.74	41.67
TraesCS5B01G381800.1	Wheat	nucleus	46.07	41.51
CDY47148	Canola	nucleus	50.26	41.2
CDY62130	Canola	cytosol, nucleus, plastid	50.26	41.2
Zm00001d033319_P001	Maize	nucleus	48.69	41.15
Os03t0633800-01	Rice	nucleus	48.69	41.15
CDY63910	Canola	cytosol, nucleus, plastid	51.31	40.83
CDY30781	Canola	cytosol, nucleus, plastid	51.31	40.83
Os03t0797800-01	Rice	nucleus	41.88	40.61
TraesCS5A01G378200.1	Wheat	nucleus	45.03	40.57
CDY71748	Canola	cytosol, nucleus, plastid	36.65	40.46
Os07t0182400-01	Rice	plastid	46.07	40.18
CDY40881	Canola	cytosol	38.22	39.89
CDY10349	Canola	endoplasmic reticulum, extracellular	51.31	39.84
EES16315	Sorghum	cytosol	50.79	39.75
Zm00001d030993_P001	Maize	nucleus	39.79	38.19
CDY06836	Canola	nucleus	50.26	38.1
CDY53800	Canola	nucleus	37.17	37.77
HORVU5Hr1G106350.2	Barley	plastid	43.46	36.89
CDY50113	Canola	cytosol, nucleus, plastid	33.51	35.36
CDY25617	Canola	nucleus	48.69	34.96
CDY50750	Canola	nucleus, plastid	52.88	34.71
CDX89499	Canola	nucleus	48.17	33.95
HORVU5Hr1G014290.1	Barley	mitochondrion	43.46	32.42
CDY37837	Canola	mitochondrion	46.07	29.73
HORVU5Hr1G093640.1	Barley	mitochondrion	48.17	29.3
CDY68170	Canola	nucleus, plastid	47.64	29.26
CDY18679	Canola	plastid	47.64	29.17
CDY66936	Canola	cytosol, nucleus, plastid	41.88	28.99
CDY45607	Canola	cytosol, nucleus, plastid	47.12	27.36
CDY08767	Canola	cytosol, nucleus, plastid	47.12	27.11
Zm00001d034463_P001	Maize	extracellular, golgi	41.88	25.0
CDY63072	Canola	nucleus	49.21	23.62

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078H617	UniProt:A0A078H617	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlants:CDY32934	ProteinID:CDY32934	ProteinID:CDY32934.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00053132001	InterPro:IPR000270	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF11	SUPFAM:SSF54277	UniParc:UPI0004EDCA86

Description

BnaA09g16590DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078H617]

Coordinates

chrLK032303:-:78650..79809

Molecular Weight (calculated)

21540.7 Da

IEP (calculated)

5.216

GRAVY (calculated)

-0.719

Length

191 amino acids

Sequence
(BLAST)

001: MENVGVCDEF VNLKATELRL GLPGTEDGGE EERQKVSCCK SNKRAFPETE KDIESTGKTE TASPPKAQIV GWPPVRSYRK NNIQTKKNES EGQGMYVKVS
101: MDGAPYLRKI DLTVYKQYPE LMKSLENMFK FSVGEYCERE GYKGSEFVPT YEDKDGDWML VGDVPWEMFV SSCKRLRIMK GSEAKGLGCG V

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.