Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67912 | nucleus |
| CDX68620 | nucleus |
| CDX76680 | nucleus |
| CDX80025 | nucleus |
| CDX80168 | nucleus |
| CDX83741 | nucleus |
| CDX83778 | nucleus |
| CDX89163 | nucleus |
| CDX92437 | nucleus |
| CDX95705 | nucleus |
| CDX96672 | nucleus |
| CDY01393 | nucleus |
| CDY11468 | nucleus |
| CDY16560 | nucleus |
| CDY26690 | nucleus |
| CDY29392 | nucleus |
| CDY30172 | nucleus |
| CDY31545 | nucleus |
| CDY39348 | nucleus |
| CDY41030 | nucleus |
| CDY43553 | nucleus |
| CDY45069 | nucleus |
| CDY46728 | nucleus |
| CDY53998 | nucleus |
| CDY61164 | nucleus |
| CDY62586 | nucleus |
| CDY68868 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030219.1-P | Field mustard | nucleus | 94.46 | 96.24 |
| CDY25617 | Canola | nucleus | 93.36 | 95.11 |
| AT2G22670.4 | Thale cress | nucleus | 85.61 | 68.64 |
| KRH75635 | Soybean | nucleus | 67.9 | 58.23 |
| CDY40881 | Canola | cytosol | 37.64 | 55.74 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 35.79 | 53.59 |
| KRH39524 | Soybean | nucleus | 69.74 | 53.39 |
| KRH74432 | Soybean | nucleus | 70.11 | 52.92 |
| CDY68170 | Canola | nucleus, plastid | 60.15 | 52.41 |
| CDY10694 | Canola | mitochondrion | 33.58 | 52.3 |
| KRH45470 | Soybean | nucleus | 66.79 | 51.71 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 62.36 | 51.37 |
| CDY37837 | Canola | mitochondrion | 56.09 | 51.35 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 62.36 | 50.9 |
| CDX94876 | Canola | nucleus | 32.1 | 50.88 |
| CDY18679 | Canola | plastid | 58.3 | 50.64 |
| CDY10692 | Canola | nucleus | 32.1 | 50.58 |
| CDY40837 | Canola | nucleus | 31.73 | 50.29 |
| CDY35493 | Canola | nucleus | 31.73 | 50.29 |
| CDX92972 | Canola | nucleus | 31.73 | 50.29 |
| CDY10346 | Canola | nucleus | 31.73 | 50.0 |
| Solyc04g076850.2.1 | Tomato | nucleus | 63.84 | 49.57 |
| PGSC0003DMT400016356 | Potato | nucleus | 63.47 | 49.28 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 50.18 | 49.28 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 32.47 | 48.89 |
| CDY06836 | Canola | nucleus | 45.02 | 48.41 |
| CDY10069 | Canola | nucleus | 32.84 | 48.37 |
| KRH72523 | Soybean | nucleus | 65.31 | 48.36 |
| KRH62157 | Soybean | nucleus | 64.21 | 48.33 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 33.95 | 48.17 |
| CDY36883 | Canola | nucleus | 30.26 | 47.67 |
| CDY53735 | Canola | nucleus | 30.26 | 47.67 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 33.58 | 47.64 |
| KRH16912 | Soybean | nucleus | 64.21 | 47.41 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 32.1 | 46.77 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 39.85 | 46.75 |
| CDY53305 | Canola | cytosol | 26.94 | 46.5 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 40.96 | 46.25 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 40.96 | 46.25 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 31.73 | 46.24 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 40.22 | 45.99 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 39.48 | 45.92 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 39.85 | 45.76 |
| KRH52867 | Soybean | nucleus | 60.89 | 45.33 |
| CDY18214 | Canola | nucleus | 37.27 | 45.09 |
| CDX89832 | Canola | nucleus | 37.27 | 45.09 |
| CDY47148 | Canola | nucleus | 38.75 | 45.06 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 39.11 | 44.73 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 37.64 | 44.54 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 37.27 | 44.3 |
| CDY32537 | Canola | nucleus | 37.27 | 44.3 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 66.05 | 43.66 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 31.0 | 43.3 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 39.11 | 43.09 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 30.63 | 42.78 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 31.0 | 42.64 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 31.0 | 42.64 |
| CDY68807 | Canola | nucleus | 29.89 | 41.33 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 25.46 | 39.88 |
| CDY26042 | Canola | nucleus | 28.78 | 39.8 |
| CDY50750 | Canola | nucleus, plastid | 41.33 | 38.49 |
| CDY53800 | Canola | nucleus | 26.57 | 38.3 |
| CDY63072 | Canola | nucleus | 38.38 | 26.13 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078DLN5 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX89499 |
| ProteinID:CDX89499 | ProteinID:CDX89499.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00149773001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF24 | SUPFAM:SSF54277 | UniParc:UPI0004EE9C11 | SEG:seg | : |
Description
BnaC04g35180D
Coordinates
chrLK031859:+:453438..455073
Molecular Weight (calculated)
29858.6 Da
IEP (calculated)
8.461
GRAVY (calculated)
-0.492
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYQLQSVDK EGLGTATCLK ERNYLGLSDC SSSVDSSTVP NLVLDTDKKS SLNFKATELR LGLPESSQSP QRETDFGLLS PRTPDEKLLF PLLPCKDHAS
101: GNKRGYLAKS GSNNAPASKA QVVGWPPIRS YRKNTMASST SKNTNEVGLG PLFVKVSMDG APYLRKVDLR TYTCYQHLSS ALEKMFSCFT LGQCGLHGAH
201: GRERMSEVKL KDLLHGSEFV LTYEDKDGDW MLVGDVPWEI FTESCRKLKI MKSSDSIGLA PSAVEKSKNK D
101: GNKRGYLAKS GSNNAPASKA QVVGWPPIRS YRKNTMASST SKNTNEVGLG PLFVKVSMDG APYLRKVDLR TYTCYQHLSS ALEKMFSCFT LGQCGLHGAH
201: GRERMSEVKL KDLLHGSEFV LTYEDKDGDW MLVGDVPWEI FTESCRKLKI MKSSDSIGLA PSAVEKSKNK D
001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.