Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015298.1-P | Field mustard | nucleus | 99.55 | 99.55 |
| CDY18214 | Canola | nucleus | 97.32 | 97.32 |
| CDY32537 | Canola | nucleus | 89.29 | 87.72 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 87.95 | 86.03 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 86.61 | 85.09 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 86.61 | 84.72 |
| KRH34377 | Soybean | nucleus | 69.64 | 65.27 |
| CDY47148 | Canola | nucleus | 67.86 | 65.24 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 66.96 | 64.38 |
| CDY10694 | Canola | mitochondrion | 50.0 | 64.37 |
| Solyc09g083290.2.1 | Tomato | nucleus | 66.96 | 63.56 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 68.3 | 62.96 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 66.52 | 62.87 |
| PGSC0003DMT400015610 | Potato | nucleus | 66.52 | 62.6 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 65.62 | 61.25 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 65.62 | 61.25 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 65.62 | 59.76 |
| GSMUA_Achr10P... | Banana | nucleus | 63.39 | 58.92 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 60.27 | 58.44 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 60.27 | 57.2 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 62.05 | 57.2 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 61.16 | 56.15 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 59.38 | 56.12 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 61.61 | 55.65 |
| CDX92972 | Canola | nucleus | 41.07 | 53.8 |
| CDX94876 | Canola | nucleus | 41.07 | 53.8 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 57.59 | 53.53 |
| CDY10692 | Canola | nucleus | 41.07 | 53.49 |
| CDY35493 | Canola | nucleus | 40.62 | 53.22 |
| CDY40837 | Canola | nucleus | 40.62 | 53.22 |
| CDY10346 | Canola | nucleus | 40.62 | 52.91 |
| EER90896 | Sorghum | nucleus | 54.02 | 51.49 |
| Zm00001d033976_P002 | Maize | nucleus | 54.46 | 51.48 |
| Os03t0742900-01 | Rice | vacuole | 54.02 | 51.27 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 57.59 | 51.19 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 57.59 | 51.19 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 42.41 | 51.08 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 57.59 | 50.99 |
| CDY36883 | Canola | nucleus | 38.84 | 50.58 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 52.23 | 50.43 |
| Os03t0633500-01 | Rice | cytosol | 52.23 | 50.21 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 52.23 | 50.21 |
| Zm00001d013302_P002 | Maize | nucleus | 50.89 | 50.0 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 52.23 | 50.0 |
| CDY53735 | Canola | nucleus | 38.39 | 50.0 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.41 | 49.74 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 42.41 | 49.74 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 52.23 | 49.37 |
| CDY63072 | Canola | nucleus | 87.5 | 49.25 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 40.62 | 48.92 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 39.29 | 48.89 |
| CDY40881 | Canola | cytosol | 39.73 | 48.63 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 54.91 | 48.62 |
| CDY53305 | Canola | cytosol | 33.93 | 48.41 |
| EES17334 | Sorghum | cytosol | 59.82 | 47.69 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 70.09 | 47.43 |
| Os12t0601300-01 | Rice | nucleus | 58.48 | 47.29 |
| CDY10069 | Canola | nucleus | 38.84 | 47.28 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 53.12 | 47.04 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 37.95 | 46.96 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 40.62 | 46.91 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 57.59 | 46.74 |
| CDY50750 | Canola | nucleus, plastid | 60.71 | 46.74 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 54.91 | 46.59 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 40.18 | 46.39 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 38.84 | 44.16 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 38.84 | 44.16 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 32.59 | 42.2 |
| CDY06836 | Canola | nucleus | 47.32 | 42.06 |
| CDY26042 | Canola | nucleus | 35.71 | 40.82 |
| CDY68807 | Canola | nucleus | 35.71 | 40.82 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 50.45 | 40.21 |
| CDY25617 | Canola | nucleus | 45.98 | 38.72 |
| CDX89499 | Canola | nucleus | 45.09 | 37.27 |
| CDY53800 | Canola | nucleus | 31.25 | 37.23 |
| CDY37837 | Canola | mitochondrion | 49.11 | 37.16 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 51.79 | 36.83 |
| CDY68170 | Canola | nucleus, plastid | 50.89 | 36.66 |
| Zm00001d041416_P001 | Maize | nucleus | 56.25 | 36.63 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 49.55 | 36.39 |
| CDY18679 | Canola | plastid | 49.55 | 35.58 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 49.55 | 33.74 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 50.0 | 33.73 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 41.07 | 33.33 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078DLR0 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX89832 |
| ProteinID:CDX89832 | ProteinID:CDX89832.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150288001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EF48B7 | : | : |
Description
BnaA10g02500D
Coordinates
chrLK031861:-:295737..297544
Molecular Weight (calculated)
24910.1 Da
IEP (calculated)
8.453
GRAVY (calculated)
-0.521
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGNIDLNLQ ETELCLGLPG GMTGTKRGFS ETVDLKLNLN NEPESKEVSK THDVVISVSK EKNTCPKDPT KPPAKAQVVG WPPVRSYRKN VMGSCQKSNG
101: VTETAVFVKV SMDGAPYLRK VDLKMYKSYD ELSNALSNMF GSFTMGKNGG EEGMIDFMNE RKVRDLVNSW DYVPSYEDKD GDWMLVGDVP WPMFVDTCKR
201: LRLMKGSDAI GLAPRAMGKC KSRT
101: VTETAVFVKV SMDGAPYLRK VDLKMYKSYD ELSNALSNMF GSFTMGKNGG EEGMIDFMNE RKVRDLVNSW DYVPSYEDKD GDWMLVGDVP WPMFVDTCKR
201: LRLMKGSDAI GLAPRAMGKC KSRT
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.