Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 44.7 | 69.41 |
| Os03t0633500-01 | Rice | cytosol | 58.71 | 66.52 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 63.26 | 66.01 |
| GSMUA_Achr10P... | Banana | nucleus | 59.09 | 64.73 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 56.82 | 61.73 |
| KRG92683 | Soybean | nucleus | 53.03 | 61.67 |
| Solyc06g008590.2.1 | Tomato | nucleus | 48.48 | 61.54 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 56.82 | 61.48 |
| PGSC0003DMT400013627 | Potato | nucleus | 49.62 | 61.22 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 57.2 | 60.89 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 55.3 | 60.58 |
| PGSC0003DMT400041976 | Potato | nucleus | 48.86 | 60.56 |
| EES17334 | Sorghum | cytosol | 64.02 | 60.14 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 57.58 | 60.08 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 63.64 | 59.79 |
| CDY10694 | Canola | mitochondrion | 39.02 | 59.2 |
| EER90896 | Sorghum | nucleus | 52.27 | 58.72 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 51.89 | 58.05 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 53.41 | 58.02 |
| Solyc06g053830.2.1 | Tomato | nucleus | 47.73 | 57.8 |
| Bra040122.1-P | Field mustard | nucleus | 49.24 | 57.78 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 50.38 | 57.58 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 51.89 | 57.56 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 51.14 | 57.2 |
| KRH68738 | Soybean | nucleus | 52.65 | 57.2 |
| Bra040398.1-P | Field mustard | nucleus | 50.0 | 57.14 |
| KRG96977 | Soybean | nucleus | 49.24 | 56.52 |
| KRH34377 | Soybean | nucleus | 51.14 | 56.49 |
| Solyc09g083290.2.1 | Tomato | nucleus | 50.38 | 56.36 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 50.38 | 56.12 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 48.48 | 55.9 |
| PGSC0003DMT400015610 | Potato | nucleus | 50.38 | 55.88 |
| Bra039855.1-P | Field mustard | nucleus | 49.24 | 55.79 |
| CDY47148 | Canola | nucleus | 49.24 | 55.79 |
| KRH32099 | Soybean | nucleus | 52.27 | 55.65 |
| KRG95616 | Soybean | nucleus | 53.03 | 55.56 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 48.11 | 55.46 |
| Bra030560.1-P | Field mustard | nucleus | 48.11 | 55.46 |
| KRH67289 | Soybean | nucleus | 53.03 | 55.12 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 48.48 | 54.94 |
| CDY18214 | Canola | nucleus | 46.59 | 54.91 |
| CDX89832 | Canola | nucleus | 46.59 | 54.91 |
| Bra032520.1-P | Field mustard | nucleus | 46.97 | 54.63 |
| Bra015298.1-P | Field mustard | nucleus | 46.21 | 54.46 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 46.97 | 54.39 |
| CDY32537 | Canola | nucleus | 46.97 | 54.39 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 51.14 | 54.22 |
| Solyc01g097290.2.1 | Tomato | nucleus | 51.14 | 53.78 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 48.11 | 52.92 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 48.11 | 52.92 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 60.98 | 52.79 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 62.88 | 52.7 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.11 | 52.48 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 46.97 | 52.32 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 46.97 | 52.32 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 48.11 | 52.26 |
| AT4G14550.2 | Thale cress | nucleus | 46.21 | 52.14 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 48.11 | 51.63 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 43.94 | 50.22 |
| KRH71337 | Soybean | nucleus | 31.44 | 48.82 |
| EES19135 | Sorghum | nucleus, plastid | 35.61 | 46.53 |
| KXG31707 | Sorghum | nucleus | 38.64 | 46.36 |
| KXG20284 | Sorghum | plastid | 32.58 | 46.24 |
| CDY50750 | Canola | nucleus, plastid | 50.38 | 45.7 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 31.44 | 44.62 |
| OQU77659 | Sorghum | nucleus | 40.15 | 42.57 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 51.52 | 41.09 |
| EER89802 | Sorghum | cytosol | 38.64 | 40.96 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 30.68 | 40.7 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 31.82 | 37.17 |
| EES16315 | Sorghum | cytosol | 33.33 | 36.07 |
| KXG22521 | Sorghum | nucleus | 37.5 | 35.48 |
| KXG33104 | Sorghum | nucleus, plastid | 34.85 | 33.21 |
| CDY63072 | Canola | nucleus | 48.48 | 32.16 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:8062473 | UniProt:A0A1Z5S5V2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | EnsemblPlants:OQU91311 | ProteinID:OQU91311 | ProteinID:OQU91311.1 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | EnsemblPlantsGene:SORBI_3001G161601 | SUPFAM:SSF54277 | UniParc:UPI0001A82194 |
| RefSeq:XP_002464208.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:13298718..13301636
Molecular Weight (calculated)
27970.1 Da
IEP (calculated)
5.051
GRAVY (calculated)
-0.470
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLGFEETE LRLGLPGGND AGDAAAARKR GFEETIDLKL KLEQPAAPHL EKEEEAGAGD AVAPGAVPLS SPPAASTAGA GTAMKRSPSQ SSVVTADAPP
101: DPEKPRAPKA QAVGWPPVRS FRKSILAVQS QRSGGDDKVN GGKTSPAFVK VSMDGAPYLR KVDLRTYGSY QELSKALQKM FSSFTIGSCG PQGMMNEETK
201: LQADLVSGSD DYLPTYEDKD GDWMLVGDVP WEMFVESCKR LRIMKGSEAV GLAPRAMDKC NNSC
101: DPEKPRAPKA QAVGWPPVRS FRKSILAVQS QRSGGDDKVN GGKTSPAFVK VSMDGAPYLR KVDLRTYGSY QELSKALQKM FSSFTIGSCG PQGMMNEETK
201: LQADLVSGSD DYLPTYEDKD GDWMLVGDVP WEMFVESCKR LRIMKGSEAV GLAPRAMDKC NNSC
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.