Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039855.1-P | Field mustard | nucleus | 97.85 | 97.85 |
| CDY47148 | Canola | nucleus | 97.85 | 97.85 |
| AT4G14550.2 | Thale cress | nucleus | 79.83 | 79.49 |
| CDY10694 | Canola | mitochondrion | 57.94 | 77.59 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 77.68 | 76.37 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 75.97 | 73.75 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 75.97 | 73.75 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 75.54 | 71.54 |
| KRH34377 | Soybean | nucleus | 72.1 | 70.29 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 72.1 | 69.14 |
| CDX89832 | Canola | nucleus | 64.38 | 66.96 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 65.67 | 66.81 |
| CDY32537 | Canola | nucleus | 65.24 | 66.67 |
| CDY18214 | Canola | nucleus | 63.95 | 66.52 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 64.81 | 66.23 |
| Solyc09g083290.2.1 | Tomato | nucleus | 66.95 | 66.1 |
| PGSC0003DMT400015610 | Potato | nucleus | 67.38 | 65.97 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 60.52 | 61.04 |
| GSMUA_Achr10P... | Banana | nucleus | 62.23 | 60.17 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 60.52 | 59.75 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 61.8 | 59.02 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 59.23 | 58.23 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 60.09 | 57.61 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 60.52 | 56.85 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 58.8 | 56.85 |
| Os03t0742900-01 | Rice | vacuole | 55.36 | 54.66 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 53.22 | 53.45 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 57.51 | 53.17 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 57.51 | 53.17 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 53.22 | 52.99 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 57.51 | 52.96 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 52.79 | 52.79 |
| EER90896 | Sorghum | nucleus | 53.22 | 52.77 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 53.22 | 52.32 |
| Zm00001d033976_P002 | Maize | nucleus | 53.22 | 52.32 |
| CDX94876 | Canola | nucleus | 38.2 | 52.05 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 73.82 | 51.96 |
| CDY10692 | Canola | nucleus | 38.2 | 51.74 |
| CDY40837 | Canola | nucleus | 37.77 | 51.46 |
| CDX92972 | Canola | nucleus | 37.77 | 51.46 |
| CDY35493 | Canola | nucleus | 37.77 | 51.46 |
| CDY10346 | Canola | nucleus | 37.77 | 51.16 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 55.36 | 50.99 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 40.34 | 50.54 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 41.2 | 50.26 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.2 | 50.26 |
| Os03t0633500-01 | Rice | cytosol | 50.21 | 50.21 |
| Zm00001d013302_P002 | Maize | nucleus | 48.93 | 50.0 |
| CDY40881 | Canola | cytosol | 39.06 | 49.73 |
| EES17334 | Sorghum | cytosol | 59.66 | 49.47 |
| CDY36883 | Canola | nucleus | 36.48 | 49.42 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 58.37 | 49.28 |
| CDY50750 | Canola | nucleus, plastid | 61.37 | 49.14 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 37.77 | 48.89 |
| CDY53735 | Canola | nucleus | 36.05 | 48.84 |
| Os12t0601300-01 | Rice | nucleus | 57.94 | 48.74 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 54.94 | 48.48 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 38.63 | 48.39 |
| CDY10069 | Canola | nucleus | 37.77 | 47.83 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 51.5 | 47.43 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 39.48 | 47.42 |
| CDY53305 | Canola | cytosol | 31.33 | 46.5 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 38.63 | 46.39 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 35.19 | 45.3 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 37.77 | 44.67 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 37.77 | 44.67 |
| CDY06836 | Canola | nucleus | 47.64 | 44.05 |
| CDY68807 | Canola | nucleus | 35.19 | 41.84 |
| CDY26042 | Canola | nucleus | 34.76 | 41.33 |
| CDY25617 | Canola | nucleus | 46.78 | 40.98 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 48.93 | 40.57 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 30.04 | 40.46 |
| CDX89499 | Canola | nucleus | 45.92 | 39.48 |
| CDY63072 | Canola | nucleus | 66.09 | 38.69 |
| CDY37837 | Canola | mitochondrion | 48.07 | 37.84 |
| Zm00001d041416_P001 | Maize | nucleus | 55.79 | 37.79 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 50.21 | 37.14 |
| CDY68170 | Canola | nucleus, plastid | 49.36 | 36.98 |
| CDY53800 | Canola | nucleus | 29.61 | 36.7 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 47.64 | 36.39 |
| CDY18679 | Canola | plastid | 48.07 | 35.9 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 48.93 | 34.65 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 48.93 | 34.34 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 39.91 | 33.7 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078JCX2 | UniProt:A0A078JCX2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY62130 | ProteinID:CDY62130 | ProteinID:CDY62130.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00035986001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF89 | SUPFAM:SSF54277 | UniParc:UPI0004EE0CAD |
Description
BnaC08g47390DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCX2]
Coordinates
chrLK034102:-:32127..34374
Molecular Weight (calculated)
25900.3 Da
IEP (calculated)
8.575
GRAVY (calculated)
-0.458
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLINLKET ELCLGLPGGP DPVETPTKSC LRNKRGFSEI VELKLGLHST KQGSVDLNVA GAPKEKTLHK DPSKPPAKAQ VVGWPPVRNY RKSVMTHQKC
101: SEVEEASSDR GGGTVAFVKV SMDGAPYLRK VDLKMYTSYK ELSDALAKMF SSFTMGSYGA QGMIDFMNES KVMDLVNSSE YVPSYEDKDG DWMLVGDVPW
201: PMFIESCKRL RIMKGSEAIG LAPRAMEKYK NRF
101: SEVEEASSDR GGGTVAFVKV SMDGAPYLRK VDLKMYTSYK ELSDALAKMF SSFTMGSYGA QGMIDFMNES KVMDLVNSSE YVPSYEDKDG DWMLVGDVPW
201: PMFIESCKRL RIMKGSEAIG LAPRAMEKYK NRF
001: MNLKETELCL GLPGGTETVE SPAKSGVGNK RGFSETVDLK LNLQSNKQGH VDLNTNGAPK EKTFLKDPSK PPAKAQVVGW PPVRNYRKNV MANQKSGEAE
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS
Arabidopsis Description
IAA14indole-3-acetic acid inducible 14 [Source:TAIR;Acc:AT4G14550]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.