Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50113 | Canola | cytosol, nucleus, plastid | 61.96 | 94.48 |
| CDY40881 | Canola | cytosol | 48.55 | 73.22 |
| CDY37837 | Canola | mitochondrion | 68.48 | 63.85 |
| CDY68170 | Canola | nucleus, plastid | 69.57 | 61.74 |
| CDY18679 | Canola | plastid | 67.75 | 59.94 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 71.01 | 59.57 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 70.65 | 58.73 |
| CDY25617 | Canola | nucleus | 49.64 | 51.5 |
| CDX89499 | Canola | nucleus | 49.28 | 50.18 |
| CDY10694 | Canola | mitochondrion | 30.07 | 47.7 |
| CDY35493 | Canola | nucleus | 28.26 | 45.61 |
| CDX94876 | Canola | nucleus | 28.26 | 45.61 |
| CDY40837 | Canola | nucleus | 28.26 | 45.61 |
| CDY10692 | Canola | nucleus | 28.26 | 45.35 |
| CDX92972 | Canola | nucleus | 27.9 | 45.03 |
| CDY53735 | Canola | nucleus | 27.9 | 44.77 |
| CDY36883 | Canola | nucleus | 27.9 | 44.77 |
| CDY10346 | Canola | nucleus | 27.9 | 44.77 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 28.26 | 43.33 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 28.26 | 41.94 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 28.99 | 41.88 |
| CDY10069 | Canola | nucleus | 27.9 | 41.85 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 34.78 | 41.56 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 35.51 | 41.53 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 27.9 | 41.4 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 28.62 | 41.36 |
| CDX89832 | Canola | nucleus | 33.33 | 41.07 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 34.06 | 41.05 |
| CDY18214 | Canola | nucleus | 32.97 | 40.62 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 34.78 | 40.51 |
| CDY47148 | Canola | nucleus | 34.06 | 40.34 |
| CDY53305 | Canola | cytosol | 22.83 | 40.13 |
| CDY06836 | Canola | nucleus | 36.59 | 40.08 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 33.7 | 39.91 |
| CDY32537 | Canola | nucleus | 32.97 | 39.91 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 34.06 | 39.66 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 34.42 | 39.58 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 34.42 | 39.58 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 32.61 | 39.47 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 35.14 | 39.43 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 26.81 | 38.14 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 26.09 | 37.11 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 25.72 | 36.04 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 25.72 | 36.04 |
| CDY68807 | Canola | nucleus | 25.0 | 35.2 |
| CDY26042 | Canola | nucleus | 24.64 | 34.69 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 21.74 | 34.68 |
| CDY50750 | Canola | nucleus, plastid | 35.87 | 34.02 |
| CDY53800 | Canola | nucleus | 22.83 | 33.51 |
| CDY63072 | Canola | nucleus | 34.42 | 23.87 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078JMF0 | UniProt:A0A078JMF0 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY66936 | ProteinID:CDY66936 | ProteinID:CDY66936.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00057666001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF24 | SUPFAM:SSF54277 | UniParc:UPI0004EF2703 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g47310DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMF0]
Coordinates
chrLK035595:+:10477..12435
Molecular Weight (calculated)
30785.0 Da
IEP (calculated)
9.125
GRAVY (calculated)
-0.353
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPLFPSSQ IYKYERAERG GLKKHNYFGN SDCSSYSVGS STLSGLAEDD KAVIRLKATD LTLGLPGSRS PVRDTDLHLL SYAKLDERPF LPLVPLKDEI
101: CPFSSLKNIA SGNKSSVYTE KNWTFPEGVA SQYGIDLGWP PVRSFRKNTL ATTCSAAFFV KVSMDGAPYL RKVDLISYTN YMELSTALEK MFTTFTLGQC
201: GSNKATRKDK LCETKLKDLL NGKDSVLTYE DKDGDWMLVG DVPWEMFIDV CKKKIMKGCN AIGLAAAPRA MWRNRR
101: CPFSSLKNIA SGNKSSVYTE KNWTFPEGVA SQYGIDLGWP PVRSFRKNTL ATTCSAAFFV KVSMDGAPYL RKVDLISYTN YMELSTALEK MFTTFTLGQC
201: GSNKATRKDK LCETKLKDLL NGKDSVLTYE DKDGDWMLVG DVPWEMFIDV CKKKIMKGCN AIGLAAAPRA MWRNRR
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLGAV EKSKNKERV
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLGAV EKSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.