Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040398.1-P | Field mustard | nucleus | 97.4 | 97.4 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 93.07 | 91.1 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 90.04 | 88.14 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 88.74 | 86.5 |
| CDY50750 | Canola | nucleus, plastid | 98.27 | 78.01 |
| CDY10694 | Canola | mitochondrion | 49.35 | 65.52 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 63.64 | 62.03 |
| GSMUA_Achr10P... | Banana | nucleus | 64.07 | 61.41 |
| CDY47148 | Canola | nucleus | 61.9 | 61.37 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 60.61 | 61.14 |
| CDY18214 | Canola | nucleus | 58.87 | 60.71 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 64.5 | 60.57 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 61.04 | 60.52 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 62.77 | 60.42 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 62.77 | 60.42 |
| CDX89832 | Canola | nucleus | 58.44 | 60.27 |
| CDY32537 | Canola | nucleus | 59.31 | 60.09 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 59.31 | 60.09 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 62.34 | 59.02 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 63.64 | 58.1 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 63.2 | 57.94 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 61.9 | 57.66 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 60.61 | 57.61 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 62.77 | 57.54 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 59.74 | 57.26 |
| EES17334 | Sorghum | cytosol | 65.37 | 53.74 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 54.11 | 53.65 |
| EER90896 | Sorghum | nucleus | 54.55 | 53.62 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 53.68 | 53.45 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 54.11 | 53.42 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 63.64 | 53.26 |
| CDX94876 | Canola | nucleus | 39.39 | 53.22 |
| CDX92972 | Canola | nucleus | 39.39 | 53.22 |
| Os03t0742900-01 | Rice | vacuole | 54.11 | 52.97 |
| CDY10692 | Canola | nucleus | 39.39 | 52.91 |
| CDY10346 | Canola | nucleus | 39.39 | 52.91 |
| CDY53305 | Canola | cytosol | 35.93 | 52.87 |
| CDY35493 | Canola | nucleus | 38.96 | 52.63 |
| CDY40837 | Canola | nucleus | 38.96 | 52.63 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 57.58 | 52.57 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 43.29 | 52.36 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 53.68 | 52.32 |
| Zm00001d033976_P002 | Maize | nucleus | 53.68 | 52.32 |
| Zm00001d013302_P002 | Maize | nucleus | 51.52 | 52.19 |
| Os03t0633500-01 | Rice | cytosol | 52.38 | 51.93 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 42.86 | 51.83 |
| CDY36883 | Canola | nucleus | 38.53 | 51.74 |
| Os12t0601300-01 | Rice | nucleus | 61.9 | 51.62 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 41.56 | 51.61 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 39.83 | 51.11 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 55.41 | 50.59 |
| CDY10069 | Canola | nucleus | 40.26 | 50.54 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 40.69 | 50.54 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 57.58 | 50.38 |
| CDY53735 | Canola | nucleus | 37.23 | 50.0 |
| CDY40881 | Canola | cytosol | 39.39 | 49.73 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 41.56 | 49.48 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 40.69 | 48.45 |
| CDY06836 | Canola | nucleus | 52.38 | 48.02 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 39.83 | 46.7 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 39.83 | 46.7 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 55.41 | 45.55 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 35.5 | 45.3 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 33.77 | 45.09 |
| CDY26042 | Canola | nucleus | 36.36 | 42.86 |
| CDY68807 | Canola | nucleus | 35.93 | 42.35 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 56.71 | 41.59 |
| CDY25617 | Canola | nucleus | 47.62 | 41.35 |
| Zm00001d041416_P001 | Maize | nucleus | 61.47 | 41.28 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 54.11 | 40.98 |
| CDX89499 | Canola | nucleus | 46.75 | 39.85 |
| CDY37837 | Canola | mitochondrion | 48.48 | 37.84 |
| CDY53800 | Canola | nucleus | 30.74 | 37.77 |
| CDY68170 | Canola | nucleus, plastid | 50.22 | 37.3 |
| CDY18679 | Canola | plastid | 48.92 | 36.22 |
| CDY63072 | Canola | nucleus | 61.04 | 35.43 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 41.56 | 34.78 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 49.35 | 34.65 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 49.78 | 34.64 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HWY7 | UniProt:A0A078HWY7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY41894 | ProteinID:CDY41894 | ProteinID:CDY41894.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00073869001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EF1FCB |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g47100DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWY7]
Coordinates
chrLK032510:-:20026..22110
Molecular Weight (calculated)
25079.0 Da
IEP (calculated)
8.768
GRAVY (calculated)
-0.418
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MINFEATELR LGLPGGNHGG DMAMKNNGKR GFSETVDLKL NLSSTAMDSV SGVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TAGDAAEGTE
101: KTSSSNAATS SAAAYVKVSL DGAPYLRKID LKLYKTYQDL SDALSKMFSS FTIGNCGPQG MKDFMNESRL IDLLNGSDYV PTYEDKDGDW MLVGDVPWGM
201: FVDSCKRIRI MKGSEAIGLA PRALEKCKNR S
101: KTSSSNAATS SAAAYVKVSL DGAPYLRKID LKLYKTYQDL SDALSKMFSS FTIGNCGPQG MKDFMNESRL IDLLNGSDYV PTYEDKDGDW MLVGDVPWGM
201: FVDSCKRIRI MKGSEAIGLA PRALEKCKNR S
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.