Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040398.1-P | Field mustard | nucleus | 91.95 | 93.94 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 91.1 | 93.07 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 90.68 | 90.68 |
| Bra040122.1-P | Field mustard | nucleus | 86.02 | 90.22 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 88.56 | 88.19 |
| CDY50750 | Canola | nucleus, plastid | 91.95 | 74.57 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 66.1 | 64.2 |
| GSMUA_Achr10P... | Banana | nucleus | 63.56 | 62.24 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 60.17 | 62.01 |
| AT4G14550.2 | Thale cress | nucleus | 61.02 | 61.54 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 62.71 | 60.66 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 59.75 | 58.51 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 62.29 | 58.1 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 59.75 | 58.02 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 61.86 | 57.94 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 60.59 | 57.66 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 61.44 | 57.54 |
| AT4G14560.1 | Thale cress | nucleus | 38.98 | 54.76 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 53.39 | 54.31 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 42.8 | 54.3 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 53.39 | 54.08 |
| EER90896 | Sorghum | nucleus | 53.81 | 54.04 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 53.39 | 53.85 |
| Os03t0742900-01 | Rice | vacuole | 53.81 | 53.81 |
| EES17334 | Sorghum | cytosol | 63.98 | 53.74 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 62.29 | 53.26 |
| Os03t0633500-01 | Rice | cytosol | 52.54 | 53.22 |
| Zm00001d033976_P002 | Maize | nucleus | 53.39 | 53.16 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 56.78 | 52.96 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 52.97 | 52.74 |
| Os12t0601300-01 | Rice | nucleus | 61.44 | 52.35 |
| Zm00001d013302_P002 | Maize | nucleus | 50.0 | 51.75 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 57.2 | 51.14 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 54.24 | 50.59 |
| AT1G15580.1 | Thale cress | nucleus | 34.32 | 49.69 |
| AT3G15540.1 | Thale cress | nucleus | 39.41 | 47.21 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 55.08 | 46.26 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 54.24 | 41.97 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 55.93 | 41.9 |
| AT1G52830.1 | Thale cress | nucleus | 33.47 | 41.8 |
| Zm00001d041416_P001 | Maize | nucleus | 60.59 | 41.57 |
| AT4G29080.1 | Thale cress | nucleus | 53.39 | 41.31 |
| AT3G23030.2 | Thale cress | vacuole | 38.98 | 35.25 |
| AT2G22670.4 | Thale cress | nucleus | 50.42 | 35.21 |
| AT5G65670.1 | Thale cress | nucleus | 50.0 | 34.91 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 41.95 | 34.26 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:819633 | UniProt:A0A178VMM3 | ProteinID:AAF04899.1 | ProteinID:AEE74127.1 |
| EMBL:AF332400 | EMBL:AF375420 | EMBL:AK229447 | ArrayExpress:AT3G04730 | EnsemblPlantsGene:AT3G04730 | RefSeq:AT3G04730 |
| TAIR:AT3G04730 | RefSeq:AT3G04730-TAIR-G | EnsemblPlants:AT3G04730.1 | TAIR:AT3G04730.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EMBL:AY087195 | EMBL:BT000857 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 | Symbol:IAA16 | InterPro:IPR000270 |
| RefSeq:NP_187124.1 | UniProt:O24407 | ProteinID:OAP07028.1 | InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | UniProt:Q0WNJ2 | SUPFAM:SSF54277 | EMBL:U49072 | UniParc:UPI0000000EEB |
| SEG:seg | : | : | : | : | : |
Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
Coordinates
chr3:-:1288155..1290891
Molecular Weight (calculated)
25660.7 Da
IEP (calculated)
9.036
GRAVY (calculated)
-0.468
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.