Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26042 | Canola | nucleus | 80.42 | 77.55 |
| CDY68807 | Canola | nucleus | 78.31 | 75.51 |
| Bra018993.1-P | Field mustard | nucleus | 78.31 | 72.91 |
| CDY53800 | Canola | nucleus | 67.2 | 67.55 |
| AT3G15540.1 | Thale cress | nucleus | 60.32 | 57.87 |
| KRH09813 | Soybean | nucleus | 55.03 | 55.62 |
| KRH47514 | Soybean | nucleus | 54.5 | 55.08 |
| AT1G15580.1 | Thale cress | nucleus | 46.56 | 53.99 |
| KRH23504 | Soybean | nucleus | 53.97 | 53.97 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 54.5 | 53.65 |
| KRH44390 | Soybean | nucleus | 54.5 | 52.82 |
| PGSC0003DMT400042572 | Potato | nucleus | 30.16 | 52.78 |
| Solyc03g120380.2.1 | Tomato | nucleus | 51.32 | 50.52 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 51.85 | 50.26 |
| AT4G14560.1 | Thale cress | nucleus | 40.21 | 45.24 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 42.33 | 43.01 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 41.8 | 34.5 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 41.8 | 33.47 |
| AT4G14550.2 | Thale cress | nucleus | 40.74 | 32.91 |
| AT3G23030.2 | Thale cress | vacuole | 44.44 | 32.18 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 40.74 | 31.69 |
| AT4G29080.1 | Thale cress | nucleus | 45.5 | 28.2 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 40.74 | 26.64 |
| AT5G65670.1 | Thale cress | nucleus | 41.8 | 23.37 |
| AT2G22670.4 | Thale cress | nucleus | 40.74 | 22.78 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:841717 | UniProt:A0A178W781 | ProteinID:AAG52268.1 | EMBL:AB493505 |
| ProteinID:AEE32858.1 | EMBL:AF336915 | ArrayExpress:AT1G52830 | EnsemblPlantsGene:AT1G52830 | RefSeq:AT1G52830 | TAIR:AT1G52830 |
| RefSeq:AT1G52830-TAIR-G | EnsemblPlants:AT1G52830.1 | TAIR:AT1G52830.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EMBL:AY085353 |
| Unigene:At.10795 | UniProt:C0SV02 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009704 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 |
| GO:GO:0009791 | GO:GO:0009987 | Symbol:IAA6 | InterPro:IPR000270 | RefSeq:NP_175692.1 | ProteinID:OAP12932.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025034 | PO:PO:0025281 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF87 | UniProt:Q38824 |
| SUPFAM:SSF54277 | EMBL:U18408 | UniParc:UPI0000126696 | SEG:seg | : | : |
Description
IAA6Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W781]
Coordinates
chr1:-:19672476..19673652
Molecular Weight (calculated)
21032.3 Da
IEP (calculated)
6.590
GRAVY (calculated)
-0.339
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEGLALEI TELRLGLPGD NYSEISVCGS SKKKKRVLSD MMTSSALDTE NENSVVSSVE DESLPVVKSQ AVGWPPVCSY RRKKNNEEAS KAIGYVKVSM
101: DGVPYMRKID LGSSNSYINL VTVLENLFGC LGIGVAKEGK KCEYIIIYED KDRDWMLVGD VPWQMFKESC KRLRIVKRSD ATGFGLQQD
101: DGVPYMRKID LGSSNSYINL VTVLENLFGC LGIGVAKEGK KCEYIIIYED KDRDWMLVGD VPWQMFKESC KRLRIVKRSD ATGFGLQQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.