Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006800 | Potato | mitochondrion | 73.15 | 40.51 |
| KRH47514 | Soybean | nucleus | 64.81 | 37.43 |
| KRH23504 | Soybean | nucleus | 64.81 | 37.04 |
| KRH09813 | Soybean | nucleus | 62.96 | 36.36 |
| KRH44390 | Soybean | nucleus | 63.89 | 35.38 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 62.04 | 34.9 |
| PGSC0003DMT400051896 | Potato | plastid | 49.07 | 34.64 |
| AT1G52830.1 | Thale cress | nucleus | 52.78 | 30.16 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 53.7 | 29.9 |
| Bra001598.1-P | Field mustard | nucleus | 53.7 | 29.9 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 53.7 | 29.9 |
| PGSC0003DMT400049677 | Potato | nucleus | 50.0 | 29.51 |
| PGSC0003DMT400013662 | Potato | cytosol | 51.85 | 29.47 |
| AT3G15540.1 | Thale cress | nucleus | 53.7 | 29.44 |
| CDY68807 | Canola | nucleus | 52.78 | 29.08 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 50.93 | 28.95 |
| Bra027232.1-P | Field mustard | nucleus | 51.85 | 28.87 |
| CDY26042 | Canola | nucleus | 51.85 | 28.57 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 51.85 | 28.43 |
| Bra021117.1-P | Field mustard | cytosol, nucleus, plastid | 51.85 | 28.43 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 51.85 | 28.43 |
| Bra018993.1-P | Field mustard | nucleus | 52.78 | 28.08 |
| PGSC0003DMT400015655 | Potato | nucleus | 50.0 | 27.69 |
| PGSC0003DMT400041976 | Potato | nucleus | 52.78 | 26.76 |
| PGSC0003DMT400013627 | Potato | nucleus | 50.93 | 25.7 |
| PGSC0003DMT400015610 | Potato | nucleus | 52.78 | 23.95 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 36.11 | 23.78 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 37.96 | 23.7 |
| PGSC0003DMT400006798 | Potato | nucleus | 45.37 | 23.11 |
| CDY53800 | Canola | nucleus | 39.81 | 22.87 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 51.85 | 22.49 |
| PGSC0003DMT400006548 | Potato | plastid | 51.85 | 21.46 |
| PGSC0003DMT400001013 | Potato | nucleus | 54.63 | 21.15 |
| PGSC0003DMT400016356 | Potato | nucleus | 50.93 | 15.76 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | UniProt:M1BD95 |
| InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400016512 | PGSC:PGSC0003DMG400016512 | EnsemblPlants:PGSC0003DMT400042572 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF12 | SUPFAM:SSF54277 | UniParc:UPI000295F57F | : | : |
Description
Auxin-induced protein AUX22 [Source:PGSC_GENE;Acc:PGSC0003DMG400016512]
Coordinates
chr6:+:49476965..49478684
Molecular Weight (calculated)
12642.5 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.167
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVKVSMDGA PFLRKVDLSI HKDYSGFVMN LEKLFHFYGI CEGSSEYIPI YEDKDGDWML VGDVPWLMFS ESCKRLRIMK RSDAKVIGLR TEDFLKGINV
101: QREMTLFN
101: QREMTLFN
001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
Arabidopsis Description
IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.