Factsheet for PGSC0003DMT400006548

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120500.2.1	Tomato	nucleus	95.02	89.21
PGSC0003DMT400051896	Potato	plastid	34.1	58.17
GSMUA_Achr10P...	Banana	nucleus	60.92	57.19
VIT_09s0002g04080.t01	Wine grape	nucleus	69.73	56.88
GSMUA_Achr2P15340_001	Banana	nucleus	53.26	56.73
GSMUA_Achr10P...	Banana	nucleus	63.22	56.51
GSMUA_Achr9P06290_001	Banana	nucleus	58.62	55.84
PGSC0003DMT400041976	Potato	nucleus	45.21	55.4
PGSC0003DMT400013627	Potato	nucleus	45.21	55.14
GSMUA_Achr10P...	Banana	nucleus	58.62	55.04
HORVU3Hr1G031460.1	Barley	cytosol	48.28	54.78
GSMUA_Achr6P26730_001	Banana	nucleus	58.24	54.48
KRH23426	Soybean	nucleus	63.22	53.75
Zm00001d037774_P001	Maize	cytosol	50.19	53.69
GSMUA_Achr3P03400_001	Banana	nucleus	63.98	53.53
PGSC0003DMT400001013	Potato	nucleus	56.32	52.69
OQU77659	Sorghum	nucleus	50.19	52.61
PGSC0003DMT400049677	Potato	nucleus	36.78	52.46
GSMUA_Achr7P10930_001	Banana	nucleus	53.64	52.43
PGSC0003DMT400042572	Potato	nucleus	21.46	51.85
Os05t0230700-01	Rice	nucleus	50.96	51.75
KRH09902	Soybean	nucleus	63.22	51.72
PGSC0003DMT400015610	Potato	nucleus	46.74	51.26
TraesCS7A01G331100.1	Wheat	nucleus	47.13	51.25
TraesCS7D01G339300.1	Wheat	nucleus	47.13	51.25
EER89802	Sorghum	cytosol	48.66	51.0
Os06t0335500-01	Rice	nucleus	51.72	50.75
TraesCS7B01G242800.1	Wheat	nucleus	47.13	50.41
GSMUA_Achr2P09210_001	Banana	nucleus	47.89	50.4
PGSC0003DMT400042074	Potato	cytosol, nucleus, plastid	36.4	50.0
PGSC0003DMT400006798	Potato	nucleus	40.61	50.0
PGSC0003DMT400015655	Potato	nucleus	37.16	49.74
KRH47242	Soybean	nucleus	60.15	49.22
KRH44313	Soybean	nucleus	60.54	49.07
Os01t0231000-01	Rice	nucleus	49.43	49.05
PGSC0003DMT400034978	Potato	cytosol, mitochondrion, nucleus	30.65	48.78
PGSC0003DMT400050101	Potato	cytosol, nucleus, plastid	46.36	48.59
TraesCS3D01G162700.1	Wheat	cytosol	44.06	48.52
PGSC0003DMT400013662	Potato	cytosol	35.25	48.42
TraesCS3B01G181500.1	Wheat	cytosol	44.44	47.35
TraesCS3A01G155200.1	Wheat	cytosol	44.44	47.35
PGSC0003DMT400006800	Potato	mitochondrion	34.48	46.15
PGSC0003DMT400016356	Potato	nucleus	57.47	42.98
HORVU0Hr1G021630.1	Barley	cytosol, mitochondrion, nucleus	30.27	42.93
TraesCS3B01G303900.1	Wheat	nucleus, plastid	41.76	42.58
TraesCS1A01G390200.1	Wheat	plastid	41.76	41.76
TraesCS3D01G269700.1	Wheat	nucleus, plastid	41.38	41.7
Os05t0559400-01	Rice	nucleus	44.83	41.64
TraesCS1B01G418400.1	Wheat	nucleus	39.08	41.63
TraesCS3A01G270000.1	Wheat	nucleus, plastid	41.38	41.38
TraesCS1D01G398400.1	Wheat	nucleus	41.38	40.91
KXG22521	Sorghum	nucleus	43.68	40.86
Os01t0675700-01	Rice	nucleus	42.15	40.59
Zm00001d043878_P001	Maize	nucleus, plastid	41.76	40.52
HORVU3Hr1G062160.2	Barley	nucleus, plastid	40.23	40.38
Zm00001d009532_P001	Maize	nucleus	43.3	40.21
KXG33104	Sorghum	nucleus, plastid	42.53	40.07
Zm00001d038980_P001	Maize	cytosol, nucleus, plastid	44.06	39.79
Zm00001d010411_P001	Maize	cytosol, endoplasmic reticulum, nucleus	45.98	36.47
HORVU3Hr1G088810.1	Barley	plastid	31.8	35.02
HORVU1Hr1G086070.6	Barley	plastid	39.46	32.91
Zm00001d011588_P003	Maize	nucleus, plastid	41.0	31.38
Zm00001d024008_P001	Maize	mitochondrion	32.57	24.43

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	UniProt:M0ZRK1
InterPro:PB1_dom	PFAM:PF02309	EnsemblPlantsGene:PGSC0003DMG400002550	PGSC:PGSC0003DMG400002550	EnsemblPlants:PGSC0003DMT400006548	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF39	SUPFAM:SSF54277	UniParc:UPI000294F338	SEG:seg	:

Description

Auxin-regulated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002550]

Coordinates

chr3:-:59913389..59917196

Molecular Weight (calculated)

28703.0 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.587

Length

261 amino acids

Sequence
(BLAST)

001: MEKSSDKISS SSSSSVLNLK ETELRLGLPG SESHGVSLFG KDLDPLSNFS SRTKRGFSDA IDASGKWDLS INCRSEADGE KGNLLFSPKR GNGGSKPVEE
101: KKFTPHTSKA QVVGWPPIRS FRKNTLATKK NDGEGKTGSS CLYVKVSMDG APYLRKVDIK TYSNYAELSS ALEKMFSCFS IGQCASDRLP GQEKLSESHL
201: MDLLNGSEYV LTYEDKDGDW MLVGDVPWEM FIDSCKRLRI MKSSEAIGLA PRAINKCKNQ N

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.