Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22521 | Sorghum | nucleus | 82.01 | 84.95 |
| Zm00001d009532_P001 | Maize | nucleus | 79.93 | 82.21 |
| TraesCS1A01G390200.1 | Wheat | plastid | 70.59 | 78.16 |
| TraesCS1D01G398400.1 | Wheat | nucleus | 70.59 | 77.27 |
| TraesCS1B01G418400.1 | Wheat | nucleus | 62.98 | 74.29 |
| Os05t0559400-01 | Rice | nucleus | 71.63 | 73.67 |
| HORVU1Hr1G086070.6 | Barley | plastid | 66.78 | 61.66 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 55.02 | 59.11 |
| Zm00001d037774_P001 | Maize | cytosol | 42.56 | 50.41 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 42.56 | 50.2 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 55.71 | 47.21 |
| GSMUA_Achr10P... | Banana | nucleus | 45.33 | 44.86 |
| KRH74730 | Soybean | plastid | 24.91 | 44.72 |
| PGSC0003DMT400006548 | Potato | plastid | 39.79 | 44.06 |
| Zm00001d013071_P001 | Maize | nucleus | 27.34 | 43.65 |
| Solyc03g120500.2.1 | Tomato | nucleus | 41.87 | 43.53 |
| PGSC0003DMT400001013 | Potato | nucleus | 40.14 | 41.58 |
| CDY06836 | Canola | nucleus | 35.99 | 41.27 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 45.67 | 41.25 |
| Zm00001d018973_P001 | Maize | nucleus | 28.72 | 41.09 |
| KRH23426 | Soybean | nucleus | 43.25 | 40.72 |
| KRH09902 | Soybean | nucleus | 44.29 | 40.13 |
| KRH60250 | Soybean | nucleus | 39.79 | 40.07 |
| Bra011082.1-P | Field mustard | nucleus | 40.14 | 40.0 |
| Solyc12g007230.1.1 | Tomato | nucleus | 40.14 | 39.32 |
| KRH39325 | Soybean | nucleus | 41.52 | 39.09 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 43.25 | 39.06 |
| Zm00001d033976_P002 | Maize | nucleus | 31.83 | 38.82 |
| Zm00001d039624_P001 | Maize | nucleus | 29.41 | 38.64 |
| Zm00001d013302_P002 | Maize | nucleus | 30.45 | 38.6 |
| AT4G29080.1 | Thale cress | nucleus | 40.48 | 38.36 |
| Zm00001d030993_P001 | Maize | nucleus | 26.3 | 38.19 |
| Zm00001d033319_P001 | Maize | nucleus | 29.41 | 37.61 |
| KRH44313 | Soybean | nucleus | 41.87 | 37.58 |
| KRH47242 | Soybean | nucleus | 41.18 | 37.3 |
| Zm00001d013707_P001 | Maize | nucleus | 28.72 | 37.05 |
| Zm00001d041418_P001 | Maize | nucleus | 29.41 | 36.96 |
| Zm00001d036918_P001 | Maize | nucleus | 25.26 | 36.87 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 41.52 | 36.47 |
| Zm00001d008749_P002 | Maize | cytosol | 26.3 | 34.7 |
| Zm00001d024008_P001 | Maize | mitochondrion | 39.45 | 32.76 |
| KRH41538 | Soybean | golgi, plasma membrane | 39.79 | 32.21 |
| Zm00001d041416_P001 | Maize | nucleus | 33.91 | 28.49 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 27.68 | 25.0 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6MC87 | ProteinID:AQK88360.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF9 |
| SUPFAM:SSF54277 | UniParc:UPI0002213893 | EnsemblPlantsGene:Zm00001d038980 | EnsemblPlants:Zm00001d038980_P001 | EnsemblPlants:Zm00001d038980_T001 | SEG:seg |
Description
Auxin-responsive protein IAA27
Coordinates
chr6:-:168099647..168104795
Molecular Weight (calculated)
30450.9 Da
IEP (calculated)
6.895
GRAVY (calculated)
-0.456
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPLLQARD YMGAGATPLS CSSSGEGTGP HLALRLGLPG SDSPGRDAGP EPDHAHVDAA LTLGPAPAPA PAPPRVGAKR GFADSRDRCA KRDATAADDA
101: AGGVTGEEKR VGAAAAGAPP AAKAQVVGWP PVRSYRKNTL AMSATKTNGE DEGRSEAGCC YVKVSMDGAP YLRKVDLKTF SSYEDLSLAL EKMFTCFITG
201: QSGSCKTSRR ERLTDGSRAD ALQDQEYVLT YEDKDADWML VGDLPWDLFT TICGKLRIMR GSDAAGMAPR SPEQIVGTRI RNVARHAES
101: AGGVTGEEKR VGAAAAGAPP AAKAQVVGWP PVRSYRKNTL AMSATKTNGE DEGRSEAGCC YVKVSMDGAP YLRKVDLKTF SSYEDLSLAL EKMFTCFITG
201: QSGSCKTSRR ERLTDGSRAD ALQDQEYVLT YEDKDADWML VGDLPWDLFT TICGKLRIMR GSDAAGMAPR SPEQIVGTRI RNVARHAES
001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.