Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33336 | Sorghum | nucleus | 74.51 | 72.88 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 59.1 | 62.99 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 59.1 | 61.52 |
| Os01t0741900-01 | Rice | nucleus | 57.7 | 61.49 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 58.54 | 61.29 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 59.38 | 60.06 |
| Zm00001d038784_P001 | Maize | nucleus | 47.62 | 48.16 |
| AT5G25890.1 | Thale cress | nucleus | 22.41 | 45.71 |
| CDX87072 | Canola | cytosol | 22.41 | 45.71 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 22.13 | 45.4 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 22.13 | 45.4 |
| Bra009867.1-P | Field mustard | cytosol | 22.13 | 44.89 |
| Bra036557.1-P | Field mustard | nucleus | 21.85 | 44.57 |
| PGSC0003DMT400006709 | Potato | nucleus | 34.73 | 43.82 |
| Solyc03g121060.2.1 | Tomato | nucleus | 35.01 | 43.55 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 27.73 | 43.23 |
| AT1G51950.1 | Thale cress | nucleus | 31.09 | 41.57 |
| Bra014303.1-P | Field mustard | nucleus | 31.37 | 41.48 |
| CDY46538 | Canola | nucleus | 31.37 | 41.48 |
| CDX87863 | Canola | nucleus | 29.41 | 41.34 |
| KRH09948 | Soybean | nucleus | 36.97 | 41.25 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 26.33 | 41.23 |
| AT3G16500.1 | Thale cress | nucleus | 30.81 | 40.89 |
| CDY53439 | Canola | nucleus | 31.09 | 40.66 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 39.22 | 40.58 |
| CDY64626 | Canola | cytosol | 30.53 | 40.52 |
| CDY19790 | Canola | cytosol | 22.13 | 40.51 |
| CDY34957 | Canola | nucleus | 30.25 | 40.15 |
| Bra021184.1-P | Field mustard | nucleus | 30.25 | 40.15 |
| CDY22876 | Canola | nucleus | 28.29 | 39.92 |
| Bra018938.1-P | Field mustard | nucleus | 28.01 | 39.53 |
| CDY43104 | Canola | nucleus | 29.41 | 39.33 |
| CDX75884 | Canola | cytosol | 29.69 | 39.11 |
| Zm00001d016277_P002 | Maize | nucleus | 32.49 | 38.8 |
| CDX82399 | Canola | nucleus | 29.41 | 38.6 |
| Bra001634.1-P | Field mustard | nucleus | 29.41 | 38.6 |
| KRH44271 | Soybean | nucleus | 33.61 | 38.34 |
| KRH47203 | Soybean | nucleus | 33.89 | 38.17 |
| CDY33844 | Canola | nucleus | 26.89 | 37.94 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 38.66 | 37.6 |
| KRH23388 | Soybean | nucleus | 36.41 | 37.57 |
| CDX92077 | Canola | nucleus | 29.69 | 37.19 |
| Bra022164.1-P | Field mustard | nucleus | 29.69 | 37.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.93 | 37.01 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 24.93 | 36.03 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 37.82 | 30.75 |
| Zm00001d049715_P001 | Maize | nucleus | 19.05 | 29.18 |
| Zm00001d000288_P001 | Maize | cytosol | 14.29 | 25.89 |
| Zm00001d051911_P002 | Maize | nucleus | 20.45 | 24.83 |
| Zm00001d045203_P001 | Maize | cytosol | 13.73 | 22.69 |
| Zm00001d018414_P001 | Maize | nucleus | 12.89 | 22.33 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 11.2 | 22.1 |
| Zm00001d008201_P001 | Maize | cytosol | 7.84 | 21.54 |
| Zm00001d004697_P001 | Maize | nucleus | 17.93 | 18.34 |
| Zm00001d049141_P002 | Maize | nucleus | 17.65 | 17.75 |
Protein Annotations
| EntrezGene:100283620 | MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:B6TJZ2 |
| EMBL:EU965307 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | EMBL:KJ728507 | ProteinID:ONM38345.1 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF90 | SUPFAM:SSF54277 | UniParc:UPI000182E42A | EnsemblPlantsGene:Zm00001d043515 |
| EnsemblPlants:Zm00001d043515_P002 | EnsemblPlants:Zm00001d043515_T002 | SEG:seg | : | : | : |
Description
Aux/IAA-transcription factor 12IAA6-auxin-responsive Aux/IAA family member
Coordinates
chr3:-:202396759..202399107
Molecular Weight (calculated)
38114.2 Da
IEP (calculated)
9.248
GRAVY (calculated)
-0.639
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSGGRRGP PLPRLLDLIP DGKERKGREA QDAGRSKNSG GFGGEEDAKL ELKLGPPGLT LVEEGTTATV PRDGGVLQRE TTTTPTLSLG CFPRNPSKPA
101: VDAATAGTKR GFFDTAVEAK TEGRDERMEQ QAGAGCGNEL ALDEKTAAAA ASERQKGSCC PPTPQHAPPA ATVHSGAHVL QLGRRPSAPV VGWPPVRSFR
201: RNLAHHHHGS SSKQPTEPQN SEASRKEKPA CKKNPLVKIN MDGIPIGRKV DLAAYDSYER LSLGVKELFH GFLQAQKDMS PTAGKIFSQL LDGSGEYTLV
301: YEDNEGDRML VGDVPWNVFV STAKRLRVLR SSELAKGLVG TRPPQIAVAP RRGPPDC
101: VDAATAGTKR GFFDTAVEAK TEGRDERMEQ QAGAGCGNEL ALDEKTAAAA ASERQKGSCC PPTPQHAPPA ATVHSGAHVL QLGRRPSAPV VGWPPVRSFR
201: RNLAHHHHGS SSKQPTEPQN SEASRKEKPA CKKNPLVKIN MDGIPIGRKV DLAAYDSYER LSLGVKELFH GFLQAQKDMS PTAGKIFSQL LDGSGEYTLV
301: YEDNEGDRML VGDVPWNVFV STAKRLRVLR SSELAKGLVG TRPPQIAVAP RRGPPDC
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.