Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003011_P001 | Maize | nucleus | 17.86 | 52.24 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 9.86 | 51.79 |
| KXG26729 | Sorghum | nucleus, plastid | 63.1 | 51.38 |
| Os04t0519700-01 | Rice | nucleus | 33.67 | 50.51 |
| KXG36152 | Sorghum | nucleus | 56.63 | 50.23 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 8.67 | 48.57 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 12.41 | 48.34 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 40.14 | 41.19 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 50.0 | 41.18 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 49.49 | 41.1 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 42.18 | 40.86 |
| Zm00001d053166_P001 | Maize | nucleus | 10.2 | 40.54 |
| Zm00001d051172_P001 | Maize | nucleus | 48.98 | 40.51 |
| Zm00001d017284_P001 | Maize | nucleus | 48.47 | 40.31 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 48.3 | 40.0 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 35.03 | 39.69 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 36.9 | 39.38 |
| GSMUA_Achr11P... | Banana | nucleus | 36.22 | 39.37 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 37.24 | 39.18 |
| KRG91907 | Soybean | nucleus | 38.95 | 38.62 |
| Zm00001d014013_P002 | Maize | nucleus | 42.18 | 38.51 |
| GSMUA_Achr11P... | Banana | nucleus | 39.29 | 38.24 |
| KRH34867 | Soybean | nucleus | 39.8 | 38.24 |
| Zm00001d032683_P001 | Maize | nucleus | 42.86 | 37.0 |
| Zm00001d000358_P001 | Maize | nucleus | 44.05 | 37.0 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 39.12 | 36.92 |
| CDY43553 | Canola | nucleus | 38.27 | 36.82 |
| Solyc10g086130.1.1 | Tomato | nucleus | 39.46 | 36.77 |
| PGSC0003DMT400055522 | Potato | nucleus | 43.2 | 36.71 |
| Solyc09g007810.2.1 | Tomato | nucleus | 43.2 | 36.6 |
| Zm00001d014507_P002 | Maize | nucleus | 45.07 | 36.55 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 42.18 | 36.52 |
| KRH32480 | Soybean | nucleus | 43.2 | 36.29 |
| CDX68620 | Canola | nucleus | 37.93 | 36.14 |
| KRG95987 | Soybean | nucleus | 42.86 | 36.0 |
| KRH22880 | Soybean | nucleus | 40.65 | 35.67 |
| KRH25023 | Soybean | nucleus | 42.52 | 35.66 |
| KRH29907 | Soybean | nucleus | 42.01 | 35.44 |
| Bra011162.1-P | Field mustard | nucleus | 38.44 | 34.93 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 42.01 | 34.74 |
| AT4G30080.1 | Thale cress | nucleus | 39.46 | 34.63 |
| PGSC0003DMT400020874 | Potato | nucleus | 40.99 | 34.48 |
| KRH26435 | Soybean | nucleus | 40.99 | 34.43 |
| Solyc11g069500.1.1 | Tomato | nucleus | 40.82 | 34.33 |
| CDY15734 | Canola | nucleus | 39.46 | 34.12 |
| AT2G28350.1 | Thale cress | nucleus | 39.97 | 33.91 |
| CDY04557 | Canola | nucleus | 39.29 | 33.72 |
| Bra011955.1-P | Field mustard | nucleus | 39.8 | 33.19 |
| PGSC0003DMT400062489 | Potato | nucleus | 37.93 | 32.99 |
| Solyc06g075150.2.1 | Tomato | nucleus | 37.41 | 32.79 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 22.28 | 32.43 |
| Bra024109.1-P | Field mustard | nucleus | 36.39 | 30.84 |
| Zm00001d002929_P001 | Maize | nucleus | 26.36 | 30.21 |
| Zm00001d030803_P001 | Maize | nucleus | 16.33 | 28.24 |
| Zm00001d026687_P001 | Maize | nucleus | 22.11 | 28.14 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 10.37 | 27.6 |
| Zm00001d026694_P001 | Maize | nucleus | 17.18 | 27.6 |
| CDY46728 | Canola | nucleus | 39.12 | 27.25 |
| CDY30172 | Canola | nucleus | 36.39 | 25.78 |
| Zm00001d030801_P001 | Maize | nucleus | 18.88 | 24.89 |
| Zm00001d006004_P001 | Maize | nucleus | 12.59 | 21.96 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 12.07 | 21.85 |
| Zm00001d023704_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 10.2 | 21.35 |
| Zm00001d043922_P001 | Maize | nucleus | 25.68 | 21.33 |
| Zm00001d012731_P010 | Maize | nucleus | 23.98 | 20.43 |
| Zm00001d043431_P012 | Maize | nucleus | 23.98 | 20.38 |
| Zm00001d038698_P001 | Maize | nucleus | 23.3 | 20.15 |
| Zm00001d039006_P007 | Maize | nucleus | 25.68 | 19.66 |
Protein Annotations
| EntrezGene:103641851 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | ProteinID:AQK44924.1 | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:K7UKA6 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF37 |
| SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI00022170F1 | EnsemblPlantsGene:Zm00001d025871 | EnsemblPlants:Zm00001d025871_P001 | EnsemblPlants:Zm00001d025871_T001 |
| SEG:seg | : | : | : | : | : |
Description
ARF-transcription factor 38Auxin response factor 16
Coordinates
chr10:+:132193858..132195808
Molecular Weight (calculated)
63908.9 Da
IEP (calculated)
8.774
GRAVY (calculated)
-0.366
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPEACELTL APRMPASQAG AGAGAEPETK GSVHPQLWYA CAGPTCTVPP VGTAVYYFPQ GHAEHAGAAA DANLHAPPFV PCRVAGVRFM AELDTDEIFV
101: KIRLDPLRSG EPLTDVGEAQ VVNDEAGQRQ PTRPVISSAK TLTKSDSYSG GSLSVRRTCA ETIFPKLDKS IKRPQQLVSA RDVHGVEWTF RHVYRGTPER
201: NLLTTGWSDF VNSKKIVIGD SVVFLREEDG TIHIGLRRAE RASRRNAYGR QLVRGNASGT GAAADGVLRA EDVVAAAVTL AAAGNPFEVV HYPRATAPAF
301: CVRVATVIEA LQVSWCPGLR FKMAFEAKDL SRISWFMGTV AGVGPADPAR WPLSPWRFLQ VTWDEPELVR NMNRLSPWQV ELVATMPNLP HFAAPPTPTP
401: PRKKPRMPTY KEYQSQGRQL FDPVFPLNNP LPLPHPHHHP APTHDWNCHG FVHCSSFPFP DSIAPAAAAG IQGARHANFA QFLFSDHLLS NLRRSLVLGG
501: IRQYPGDHHA APAPRIPIPT DDVKTGSETP RSPSHATKKR DGVKPPGIRL FGQEILTEEQ MKGSHDGKAT NNTSGRSGAP EFGLEPGQ
101: KIRLDPLRSG EPLTDVGEAQ VVNDEAGQRQ PTRPVISSAK TLTKSDSYSG GSLSVRRTCA ETIFPKLDKS IKRPQQLVSA RDVHGVEWTF RHVYRGTPER
201: NLLTTGWSDF VNSKKIVIGD SVVFLREEDG TIHIGLRRAE RASRRNAYGR QLVRGNASGT GAAADGVLRA EDVVAAAVTL AAAGNPFEVV HYPRATAPAF
301: CVRVATVIEA LQVSWCPGLR FKMAFEAKDL SRISWFMGTV AGVGPADPAR WPLSPWRFLQ VTWDEPELVR NMNRLSPWQV ELVATMPNLP HFAAPPTPTP
401: PRKKPRMPTY KEYQSQGRQL FDPVFPLNNP LPLPHPHHHP APTHDWNCHG FVHCSSFPFP DSIAPAAAAG IQGARHANFA QFLFSDHLLS NLRRSLVLGG
501: IRQYPGDHHA APAPRIPIPT DDVKTGSETP RSPSHATKKR DGVKPPGIRL FGQEILTEEQ MKGSHDGKAT NNTSGRSGAP EFGLEPGQ
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.