Factsheet for Os04t0519700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0190300-01
Os01t0236300-01
Os01t0286900-01
Os01t0741900-01
Os02t0228900-01
Os02t0628600-01
Os02t0723400-02
Os04t0519700-01
Os04t0664400-01
Os05t0523300-01
Os06t0685700-01
Os10t0479900-01
Os12t0274700-01
Os12t0291100-01
Os12t0291200-00
Os12t0291400-01
Os12t0292400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Os04t0664400-01	AT1G19850.1	22096563
AT2G28350.1	Os01t0236300-01	AT1G34310.1	22096563
AT2G28350.1	Os02t0628600-01	AT2G28350.1	22096563
AT2G28350.1	Os04t0519700-01	AT2G28350.1	22096563
AT2G28350.1	Os06t0685700-01	AT2G28350.1	22096563
AT2G28350.1	Os10t0479900-01	AT2G28350.1	22096563
AT2G28350.1	Os01t0190300-01	AT3G16500.1	21734647
AT2G28350.1	Os01t0741900-01	AT3G16500.1	21734647
AT2G28350.1	Os02t0228900-01	AT3G16500.1	21734647
AT2G28350.1	Os05t0523300-01	AT3G16500.1	21734647
AT2G28350.1	Os01t0236300-01	AT3G61830.1	22096563
AT2G28350.1	Os01t0190300-01	AT5G25890.1	22096563
AT2G28350.1	Os01t0741900-01	AT5G25890.1	22096563
AT2G28350.1	Os02t0228900-01	AT5G25890.1	22096563
AT2G28350.1	Os05t0523300-01	AT5G25890.1	22096563
AT4G30080.1	Os01t0286900-01	AT3G17600.1	21798944
AT4G30080.1	Os02t0723400-02	AT3G17600.1	21798944
AT4G30080.1	Os12t0274700-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0291100-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0291200-00	AT5G38420.1	21798944
AT4G30080.1	Os12t0291400-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0292400-01	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G081710.1	Barley	cytosol	18.88	70.48
HORVU5Hr1G024100.1	Barley	cytosol	25.0	64.9
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	17.6	61.61
HORVU7Hr1G021880.1	Barley	nucleus	23.21	41.18
TraesCS2B01G397300.1	Wheat	nucleus	72.19	39.97
TraesCS2D01G376600.1	Wheat	nucleus	71.43	39.22
Os02t0628600-01	Rice	nucleus	67.09	38.62
HORVU2Hr1G089670.1	Barley	nucleus	69.9	38.59
KRG91907	Soybean	nucleus	53.06	35.08
GSMUA_Achr11P...	Banana	nucleus	48.21	34.94
GSMUA_Achr8P18930_001	Banana	nucleus	50.51	34.55
KRH34867	Soybean	nucleus	53.83	34.48
VIT_08s0040g01810.t01	Wine grape	nucleus	54.59	34.35
CDY43553	Canola	nucleus	52.81	33.88
GSMUA_Achr4P18240_001	Banana	nucleus	52.3	33.77
Zm00001d025871_P001	Maize	nucleus	50.51	33.67
CDX68620	Canola	nucleus	52.81	33.55
Bra011162.1-P	Field mustard	nucleus	54.08	32.77
AT4G30080.1	Thale cress	nucleus	55.87	32.69
Os06t0685700-01	Rice	nucleus	57.91	32.43
KRH22880	Soybean	nucleus	54.85	32.09
GSMUA_Achr5P18540_001	Banana	nucleus	42.35	31.98
VIT_13s0019g04380.t01	Wine grape	nucleus	55.1	31.81
KXG36152	Sorghum	nucleus	53.57	31.67
CDY15734	Canola	nucleus	54.85	31.62
CDY04557	Canola	nucleus	55.1	31.53
VIT_06s0004g02750.t01	Wine grape	nucleus	57.14	31.5
GSMUA_Achr5P03960_001	Banana	nucleus	44.9	31.48
AT2G28350.1	Thale cress	nucleus	55.61	31.46
Solyc09g007810.2.1	Tomato	nucleus	55.61	31.41
GSMUA_Achr11P...	Banana	nucleus	48.21	31.29
PGSC0003DMT400055522	Potato	nucleus	55.1	31.21
KXG26729	Sorghum	nucleus, plastid	57.4	31.16
Bra011955.1-P	Field mustard	nucleus	55.87	31.06
PGSC0003DMT400020874	Potato	nucleus	55.36	31.04
Solyc11g069500.1.1	Tomato	nucleus	55.36	31.04
KRH26435	Soybean	nucleus	55.1	30.86
KRG95987	Soybean	nucleus	55.1	30.86
Os10t0479900-01	Rice	nucleus	54.85	30.8
Solyc06g075150.2.1	Tomato	nucleus	52.3	30.55
PGSC0003DMT400062489	Potato	nucleus	52.55	30.47
KRH32480	Soybean	nucleus	54.34	30.43
KRH25023	Soybean	nucleus	53.57	29.96
KRH29907	Soybean	nucleus	53.06	29.84
GSMUA_Achr5P14630_001	Banana	nucleus	41.58	29.58
Solyc10g086130.1.1	Tomato	nucleus	47.45	29.48
Bra024109.1-P	Field mustard	nucleus	51.02	28.82
Os04t0690600-01	Rice	plastid	34.44	25.52
CDY46728	Canola	nucleus	54.85	25.47
HORVU2Hr1G089660.8	Barley	nucleus	20.66	24.92
CDY30172	Canola	nucleus	51.02	24.1
Os05t0563400-01	Rice	nucleus	34.95	19.24
Os01t0670800-02	Rice	nucleus	34.18	18.66
Os01t0753500-01	Rice	plastid	33.67	18.06
Os07t0183700-00	Rice	mitochondrion	22.45	16.79
Os05t0515400-01	Rice	nucleus	25.51	16.08
TraesCS2A01G380300.1	Wheat	nucleus	14.03	13.61
Os07t0183100-00	Rice	nucleus	10.71	11.73
Os07t0183350-00	Rice	extracellular	21.68	11.15
Os07t0183200-01	Rice	nucleus	1.28	1.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A0N7KJD5	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ProteinID:BAS90113.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlantsGene:Os04g0519700	EnsemblPlants:Os04t0519700-01	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF15	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0000DD919C	SEG:seg	:

Description

AUXIN RESPONSE FACTOR 10Similar to Auxin response factor 10. (Os04t0519700-01)

Coordinates

chr4:+:26013363..26016187

Molecular Weight (calculated)

42879.8 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.314

Length

392 amino acids

Sequence
(BLAST)

001: MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV
101: VDVGEAAAAE ARREEENSRP RPTSFAKTLT QSDANNGGGF SVPRFCAETI FPELDYSSEP PVQSVCAKDV HGVEWTFRHI YRGTPRRHLL TTGWSPFVNK
201: KQLTAGDSIV FMRDEGGNIH VGLRRAKRGF CSIGGDDESL SSIPGWDQYR GLMRRNATAT ATGGRTPPKG KVPPENVLTA ATRATTGQPF EVLYYPRAST
301: PEFCVRAAAV RTAMAVQWCP GMRFKMAFET EDSSRISWFM GTVAGVQASD PVRWPQSPWR LLQVHLHGTN MRQPQLDHDR VVEFLINWPP RR

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.