Factsheet for VIT_08s0040g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007810.2.1	Tomato	nucleus	75.6	67.87
PGSC0003DMT400055522	Potato	nucleus	75.28	67.77
KRH32480	Soybean	nucleus	75.28	67.0
GSMUA_Achr11P...	Banana	nucleus	55.06	63.4
GSMUA_Achr4P18240_001	Banana	nucleus	61.64	63.26
KRG95987	Soybean	nucleus	70.47	62.71
VIT_13s0019g04380.t01	Wine grape	nucleus	68.06	62.44
VIT_06s0004g02750.t01	Wine grape	nucleus	70.63	61.88
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	11.08	61.61
GSMUA_Achr8P18930_001	Banana	nucleus	56.66	61.61
GSMUA_Achr11P...	Banana	nucleus	58.59	60.43
HORVU5Hr1G024100.1	Barley	cytosol	14.61	60.26
HORVU3Hr1G081710.1	Barley	cytosol	10.11	60.0
GSMUA_Achr5P14630_001	Banana	nucleus	52.97	59.89
GSMUA_Achr5P03960_001	Banana	nucleus	53.45	59.57
GSMUA_Achr5P18540_001	Banana	nucleus	49.6	59.54
Os06t0685700-01	Rice	nucleus	63.56	56.57
TraesCS7B01G346700.1	Wheat	nucleus	62.12	55.76
Zm00001d014013_P002	Maize	nucleus	57.62	55.75
TraesCS7D01G436800.1	Wheat	nucleus	62.12	55.68
HORVU7Hr1G101270.1	Barley	nucleus	61.8	55.24
TraesCS1A01G156600.1	Wheat	nucleus	61.0	55.23
EER88840	Sorghum	nucleus	62.76	55.15
TraesCS1D01G155100.1	Wheat	nucleus	60.83	55.09
TraesCS7A01G446900.1	Wheat	nucleus	61.8	54.92
TraesCS1B01G173700.1	Wheat	nucleus	60.83	54.85
HORVU1Hr1G041770.1	Barley	nucleus	60.35	54.65
Os04t0519700-01	Rice	nucleus	34.35	54.59
EER94066	Sorghum	nucleus	60.35	54.57
Os02t0628600-01	Rice	nucleus	59.55	54.48
Os10t0479900-01	Rice	nucleus	59.87	53.44
Zm00001d014507_P002	Maize	nucleus	62.12	53.38
Zm00001d032683_P001	Maize	nucleus	58.27	53.3
Zm00001d000358_P001	Maize	nucleus	58.75	52.29
Zm00001d017284_P001	Maize	nucleus	58.27	51.34
EES05458	Sorghum	nucleus	58.27	51.27
TraesCS6A01G222300.1	Wheat	nucleus	53.61	49.7
TraesCS2B01G397300.1	Wheat	nucleus	55.7	49.01
Zm00001d051172_P001	Maize	nucleus	55.86	48.95
TraesCS2D01G376600.1	Wheat	nucleus	56.02	48.88
Solyc10g086130.1.1	Tomato	nucleus	48.96	48.34
HORVU2Hr1G089670.1	Barley	nucleus	54.25	47.61
VIT_03s0167g00010.t01	Wine grape	nucleus	7.54	46.53
TraesCS6B01G258800.1	Wheat	mitochondrion	55.38	46.18
HORVU6Hr1G058890.2	Barley	mitochondrion	55.38	45.45
TraesCS6D01G212700.1	Wheat	plastid	55.7	45.12
KXG36152	Sorghum	nucleus	46.39	43.59
VIT_00s1203g00010.t01	Wine grape	cytosol	8.19	42.86
KXG26729	Sorghum	nucleus, plastid	49.12	42.38
TraesCS2A01G380300.1	Wheat	nucleus	26.81	41.34
HORVU7Hr1G021880.1	Barley	nucleus	13.96	39.37
Zm00001d025871_P001	Maize	nucleus	36.92	39.12
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	17.82	31.99
VIT_10s0003g00420.t01	Wine grape	nucleus	30.34	24.26
HORVU2Hr1G089660.8	Barley	nucleus	12.52	24.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ProteinID:CCB57076	ProteinID:CCB57076.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6HR27	EMBL:FN596008	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39
SMART:SM01019	SUPFAM:SSF101936	TIGR:TC71158	UniParc:UPI0002108E66	ArrayExpress:VIT_08s0040g01810	EnsemblPlantsGene:VIT_08s0040g01810
EnsemblPlants:VIT_08s0040g01810.t01	unigene:Vvi.6324	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HR27]

Coordinates

chr8:+:12924098..12929097

Molecular Weight (calculated)

69390.9 Da

IEP (calculated)

7.384

GRAVY (calculated)

-0.467

Length

623 amino acids

Sequence
(BLAST)

001: MIPFLGSKEK SKEAGKCLNP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH ACASVDFRNY PRIPAYIPCR VSAMKFMADP ESDEVYAKIT LVPLNGSESD
101: YDDDGYGNGT ESQEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TADPPVQNIL AKDVHGETWK FRHIYRGTPR RHLLTTGWST FVNHKKLIAG
201: DSIVFLRAEN GDLCVGIRRA KRGIGCGPES SSGWNPAGCN YVMPYGGFSA FLREDENKLT RNGNGGSSGS NGSFFGRVKV TAEAVIEAVR LAVNGQPFEV
301: IYYPRASTPE FCVKSSLVKS ASQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPV RWPDSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNMPSI
401: HLTHFSPPRK KLRFPQYPDF PLDAQFSMPT FSSNLVGPSN PFGCLSDNIP AGMQGARHAQ YGLSLSDPHH NKFQSGLFPA PFPQLDHPAT PPKASNDYKS
501: DDRKTGFTLF EHSSCEGYQT YKVNHRETEP NLETGHCKVF MESEDVGRTL DLSLLTSYDE LCGKLAKMFT IEDSEMRNHV LYRDATGAVK HIGDEPFSDF
601: TKTAKRLTIL MDSSSDNVGV YRK

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.