Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_00s1203g00010.t01 Wine grape cytosol 97.03 82.35
HORVU6Hr1G070410.1 Barley cytosol 53.47 55.1
HORVU4Hr1G031990.1 Barley cytosol 35.64 48.0
HORVU4Hr1G080510.1 Barley cytosol 52.48 47.75
HORVU5Hr1G054640.1 Barley cytosol 52.48 47.75
HORVU1Hr1G049680.1 Barley cytosol 33.66 31.78
KRH10952 Soybean nucleus 59.41 20.62
VIT_08s0040g01810.t01 Wine grape nucleus 46.53 7.54
VIT_10s0003g00420.t01 Wine grape nucleus 57.43 7.45
VIT_13s0019g04380.t01 Wine grape nucleus 45.54 6.77
VIT_06s0004g02750.t01 Wine grape nucleus 47.52 6.75
KRH10951 Soybean cytosol, nucleus 0.0 0.0
VIT_18s0001g04180.t01 Wine grape mitochondrion, nucleus 0.0 0.0
Protein Annotations
MapMan:15.5.5.1Gene3D:2.40.330.10InterPro:B3_DNA-bdProteinID:CCB58995ProteinID:CCB58995.1InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6HWD1EMBL:FN596268GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR003340
InterPro:IPR015300PFAM:PF02362PANTHER:PTHR31384PANTHER:PTHR31384:SF68SUPFAM:SSF101936UniParc:UPI0002109C6C
ArrayExpress:VIT_03s0167g00010EnsemblPlantsGene:VIT_03s0167g00010EnsemblPlants:VIT_03s0167g00010.t01:::
Description
No Description!
Coordinates
chr3:+:12190178..12191959
Molecular Weight (calculated)
11415.6 Da
IEP (calculated)
9.201
GRAVY (calculated)
-0.588
Length
101 amino acids
Sequence
(BLAST)
001: MTLQPLSPQE QKDAYLPAEL GVPSKQPSNY FCKTLIASDT STHGGFSVPR RAAEKVFPSL DFSQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTVG
101: L
Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)
001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.