Factsheet for VIT_06s0004g02750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01740.t01
VIT_06s0004g02750.t01
VIT_06s0004g03130.t01
VIT_09s0002g03410.t01
VIT_15s0046g00290.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT2G28350.1	VIT_02s0025g01740.t01	AT1G34310.1	22096563
AT2G28350.1	VIT_06s0004g02750.t01	AT2G28350.1	22096563
AT2G28350.1	VIT_09s0002g03410.t01	AT3G16500.1	21734647
AT2G28350.1	VIT_15s0046g00290.t01	AT3G61830.1	22096563
AT2G28350.1	VIT_06s0004g03130.t01	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18240_001	Banana	nucleus	61.88	72.49
KRH22880	Soybean	nucleus	68.21	72.39
KRH26435	Soybean	nucleus	70.89	72.0
Solyc11g069500.1.1	Tomato	nucleus	70.46	71.67
PGSC0003DMT400020874	Potato	nucleus	70.04	71.24
VIT_08s0040g01810.t01	Wine grape	nucleus	61.88	70.63
GSMUA_Achr8P18930_001	Banana	nucleus	56.82	70.51
GSMUA_Achr5P18540_001	Banana	nucleus	51.2	70.13
GSMUA_Achr11P...	Banana	nucleus	59.49	70.03
VIT_13s0019g04380.t01	Wine grape	nucleus	66.81	69.96
GSMUA_Achr5P14630_001	Banana	nucleus	54.15	69.87
KRH25023	Soybean	nucleus	68.5	69.47
KRH29907	Soybean	nucleus	67.79	69.15
GSMUA_Achr11P...	Banana	nucleus	52.6	69.13
GSMUA_Achr5P03960_001	Banana	nucleus	53.73	68.34
CDY15734	Canola	nucleus	63.43	66.32
CDY04557	Canola	nucleus	63.85	66.28
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.41	66.07
Os06t0685700-01	Rice	nucleus	64.7	65.71
EER94066	Sorghum	nucleus	63.29	65.31
TraesCS1A01G156600.1	Wheat	nucleus	63.01	65.12
Bra011955.1-P	Field mustard	nucleus	64.56	65.11
TraesCS1D01G155100.1	Wheat	nucleus	62.59	64.68
TraesCS1B01G173700.1	Wheat	nucleus	62.73	64.54
TraesCS7D01G436800.1	Wheat	nucleus	63.01	64.46
TraesCS7B01G346700.1	Wheat	nucleus	62.87	64.41
AT2G28350.1	Thale cress	nucleus	62.73	64.36
Zm00001d014013_P002	Maize	nucleus	58.23	64.29
HORVU1Hr1G041770.1	Barley	nucleus	62.03	64.1
HORVU7Hr1G101270.1	Barley	nucleus	62.59	63.85
Solyc06g075150.2.1	Tomato	nucleus	60.06	63.64
TraesCS7A01G446900.1	Wheat	nucleus	62.59	63.48
EER88840	Sorghum	nucleus	63.15	63.33
PGSC0003DMT400062489	Potato	nucleus	60.2	63.31
Zm00001d032683_P001	Maize	nucleus	60.62	63.29
Os10t0479900-01	Rice	nucleus	61.46	62.61
HORVU3Hr1G081710.1	Barley	cytosol	9.14	61.9
Zm00001d014507_P002	Maize	nucleus	61.88	60.69
Os02t0628600-01	Rice	nucleus	57.52	60.06
HORVU5Hr1G024100.1	Barley	cytosol	12.66	59.6
Zm00001d000358_P001	Maize	nucleus	58.51	59.43
EES05458	Sorghum	nucleus	57.95	58.19
Zm00001d017284_P001	Maize	nucleus	56.96	57.28
Os04t0519700-01	Rice	nucleus	31.5	57.14
TraesCS6A01G222300.1	Wheat	nucleus	53.02	56.1
Zm00001d051172_P001	Maize	nucleus	55.41	55.41
TraesCS2B01G397300.1	Wheat	nucleus	53.02	53.25
TraesCS2D01G376600.1	Wheat	nucleus	53.45	53.22
TraesCS6B01G258800.1	Wheat	mitochondrion	55.7	53.01
HORVU6Hr1G058890.2	Barley	mitochondrion	55.27	51.78
HORVU2Hr1G089670.1	Barley	nucleus	51.62	51.69
TraesCS6D01G212700.1	Wheat	plastid	54.99	50.85
VIT_03s0167g00010.t01	Wine grape	nucleus	6.75	47.52
TraesCS2A01G380300.1	Wheat	nucleus	26.86	47.28
KXG36152	Sorghum	nucleus	43.74	46.91
KXG26729	Sorghum	nucleus, plastid	46.55	45.84
VIT_00s1203g00010.t01	Wine grape	cytosol	7.31	43.7
Zm00001d025871_P001	Maize	nucleus	34.74	42.01
HORVU7Hr1G021880.1	Barley	nucleus	11.81	38.01
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	17.16	35.16
VIT_10s0003g00420.t01	Wine grape	nucleus	30.1	27.47
HORVU2Hr1G089660.8	Barley	nucleus	12.52	27.38

Protein Annotations

EntrezGene:100256989	wikigene:100256989	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB43678	ProteinID:CCB43678.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6GU14
EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EntrezGene:LOC100256989	wikigene:LOC100256989	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI00019835BF	ArrayExpress:VIT_06s0004g02750	EnsemblPlantsGene:VIT_06s0004g02750	EnsemblPlants:VIT_06s0004g02750.t01	unigene:Vvi.20162	RefSeq:XP_002282437
RefSeq:XP_002282437.1	RefSeq:XP_010651172.1	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6GU14]

Coordinates

chr6:+:3443777..3447902

Molecular Weight (calculated)

77955.2 Da

IEP (calculated)

8.042

GRAVY (calculated)

-0.400

Length

711 amino acids

Sequence
(BLAST)

001: MKETEKSLDS QLWHACAGGM VQMPLVSSKV FYFPQGHAEH AHTNVDFAAA PRIPALVLCR VAAVKFMADP ETDEVYAKIR LVPIANNELD CEDDGVMGSS
101: GSEAPEKPAS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT VIAKDVHGEI WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDSIVFLRA
201: ENGDLCVGIR RAKRGIAGGP ESPSGWNPAS PYAGFPKFLR EDESKLMRNG VGGNSNPGSG GGLRGGRRVR PESVVEAATL AANGQPFEVV YYPRASTPEF
301: CVKASGVRSA VRIQWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPIIH LSPFSPPRKK
401: LRIPQHPDFP FDGQFPMSSF SSNPLGSSSP LCCLPDNTPA GIQGARHAQY GISLSDLHLN NKLQSGLFPT SFQRFDQHSR ITNGIITAHR KNNESISCLL
501: TMGNSSQNLE KSANEKTPQF LLFGQPILTE QQMSRTCSSD AVSQVLTGKS SSDGSSDKAK KISDGLGSTL EQKGKPENLS NVGFSWHQGF QTTEIGLDTG
601: HCKVFMESED VGRSLDLSVL GSYEELYTRL ANMFGIERSE TFSHVLYRDA TGAVKHTGDE PFSDFTKKAK RLTILMDSGS NNIGRTWITG MRNAENGLDS
701: SNKTGPLSIF A

Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.