Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26435 | Soybean | nucleus | 93.13 | 89.14 |
| KRH25023 | Soybean | nucleus | 74.78 | 71.47 |
| KRH29907 | Soybean | nucleus | 73.88 | 71.02 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 72.39 | 68.21 |
| KRH19868 | Soybean | nucleus | 8.96 | 67.42 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 11.19 | 66.96 |
| Solyc11g069500.1.1 | Tomato | nucleus | 67.61 | 64.81 |
| PGSC0003DMT400020874 | Potato | nucleus | 67.01 | 64.23 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 58.06 | 64.09 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 54.78 | 64.05 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 49.4 | 63.78 |
| GSMUA_Achr11P... | Banana | nucleus | 51.04 | 63.22 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 51.49 | 62.61 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 51.79 | 62.08 |
| KRH19870 | Soybean | nucleus | 47.01 | 61.28 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 9.55 | 60.95 |
| GSMUA_Achr11P... | Banana | nucleus | 54.93 | 60.93 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 13.43 | 59.6 |
| CDY15734 | Canola | nucleus | 60.3 | 59.41 |
| Zm00001d014013_P002 | Maize | nucleus | 57.01 | 59.32 |
| AT2G28350.1 | Thale cress | nucleus | 61.34 | 59.31 |
| CDY04557 | Canola | nucleus | 60.45 | 59.12 |
| PGSC0003DMT400062489 | Potato | nucleus | 59.25 | 58.73 |
| Bra011955.1-P | Field mustard | nucleus | 61.64 | 58.58 |
| Os06t0685700-01 | Rice | nucleus | 61.04 | 58.43 |
| Solyc06g075150.2.1 | Tomato | nucleus | 58.21 | 58.12 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 59.85 | 57.7 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 59.7 | 57.64 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 59.1 | 57.56 |
| EER88840 | Sorghum | nucleus | 60.9 | 57.55 |
| KRH32480 | Soybean | nucleus | 60.0 | 57.43 |
| EER94066 | Sorghum | nucleus | 58.96 | 57.33 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 58.81 | 57.27 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 59.55 | 57.25 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 58.81 | 57.02 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 58.36 | 56.83 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 59.4 | 56.78 |
| Zm00001d032683_P001 | Maize | nucleus | 57.61 | 56.68 |
| KRG95987 | Soybean | nucleus | 58.66 | 56.14 |
| Zm00001d000358_P001 | Maize | nucleus | 58.06 | 55.57 |
| Zm00001d014507_P002 | Maize | nucleus | 59.7 | 55.17 |
| Os04t0519700-01 | Rice | nucleus | 32.09 | 54.85 |
| Os10t0479900-01 | Rice | nucleus | 56.87 | 54.58 |
| Os02t0628600-01 | Rice | nucleus | 55.07 | 54.19 |
| KRG91907 | Soybean | nucleus | 47.61 | 53.79 |
| EES05458 | Sorghum | nucleus | 55.97 | 52.97 |
| KRH34867 | Soybean | nucleus | 48.36 | 52.94 |
| Zm00001d017284_P001 | Maize | nucleus | 54.48 | 51.63 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 51.64 | 51.49 |
| Zm00001d051172_P001 | Maize | nucleus | 53.43 | 50.35 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 51.49 | 48.32 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 50.75 | 48.02 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 53.43 | 47.92 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 49.85 | 47.04 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 53.28 | 47.04 |
| TraesCS6D01G212700.1 | Wheat | plastid | 53.43 | 46.55 |
| KRH16622 | Soybean | mitochondrion | 8.66 | 43.94 |
| KXG36152 | Sorghum | nucleus | 43.13 | 43.59 |
| KXG26729 | Sorghum | nucleus, plastid | 46.42 | 43.07 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 25.07 | 41.58 |
| Zm00001d025871_P001 | Maize | nucleus | 35.67 | 40.65 |
| KRH10952 | Soybean | nucleus | 17.46 | 40.21 |
| KRH25669 | Soybean | cytosol | 6.72 | 40.18 |
| KRH18828 | Soybean | nucleus | 31.94 | 38.84 |
| KRH64757 | Soybean | plastid | 32.39 | 38.61 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 12.39 | 37.56 |
| KRH16623 | Soybean | nucleus | 20.6 | 35.75 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 12.69 | 26.15 |
| KRH50128 | Soybean | nucleus | 26.87 | 25.39 |
| KRH21341 | Soybean | nucleus | 27.76 | 25.27 |
| KRH20373 | Soybean | nucleus | 26.72 | 25.07 |
| KRH10951 | Soybean | cytosol, nucleus | 10.15 | 15.89 |
Protein Annotations
| EntrezGene:100808472 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | EMBL:ACUP02008440 |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | EnsemblPlantsGene:GLYMA_13G325200 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | UniProt:I1M4J8 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlants:KRH22880 |
| ProteinID:KRH22880 | ProteinID:KRH22880.1 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI000233AC75 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:42036714..42039907
Molecular Weight (calculated)
73764.4 Da
IEP (calculated)
7.742
GRAVY (calculated)
-0.331
Length
670 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC RVAAVKFLAD PETDEVFARL RLVPLRNSEL DYEDSDANGE
101: AEGSEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTV IARDVHGEVW KFRHIYRGTP RRHLLTTGWS SFVNQKKLVA GDSIVFLRAE
201: NGDLCVGIRR AKRGGVGGPE GPCGWSSYGS GGLGLGPYGA FSGFMREESG RAKVSGESVR EAVTLAASNQ AFEVVYYPRA NTPEFCIRTS AVRGAMRIQW
301: CSGMRFKMPF ETEDSSRISW FMGTIASVQV LDPIRWPNSP WRLLQVSWDE PDLLHNVKRV SPWLVELVSN VPIIHLAAFS PPRKKLRFPL DVQFPIPSFS
401: GNPFGSSSSS SPFCCLSDNA PAGIQGARHS QIGISLSDLH LNNKLQLGLL PTKVHQLNLH AGISNAKSKE SLSSLLSMGN SNMTLEKSDH VKRHHFLLFG
501: QPILTEQQIS RSSSDVATDD ENKEKKKKGF LSDSQSSVSP GNLSSTAEFS WQLGSDTSHC KVFMESEDVG RTLDLSCLSS YQELYMRLAN MFGIERSDML
601: SHVLYCDSSG ALKQIGEEPF SEFMKTAKRL TILTDSNNKD SRRVWITGTR NAEHGLDAAS NKTGPLSIFA
101: AEGSEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTV IARDVHGEVW KFRHIYRGTP RRHLLTTGWS SFVNQKKLVA GDSIVFLRAE
201: NGDLCVGIRR AKRGGVGGPE GPCGWSSYGS GGLGLGPYGA FSGFMREESG RAKVSGESVR EAVTLAASNQ AFEVVYYPRA NTPEFCIRTS AVRGAMRIQW
301: CSGMRFKMPF ETEDSSRISW FMGTIASVQV LDPIRWPNSP WRLLQVSWDE PDLLHNVKRV SPWLVELVSN VPIIHLAAFS PPRKKLRFPL DVQFPIPSFS
401: GNPFGSSSSS SPFCCLSDNA PAGIQGARHS QIGISLSDLH LNNKLQLGLL PTKVHQLNLH AGISNAKSKE SLSSLLSMGN SNMTLEKSDH VKRHHFLLFG
501: QPILTEQQIS RSSSDVATDD ENKEKKKKGF LSDSQSSVSP GNLSSTAEFS WQLGSDTSHC KVFMESEDVG RTLDLSCLSS YQELYMRLAN MFGIERSDML
601: SHVLYCDSSG ALKQIGEEPF SEFMKTAKRL TILTDSNNKD SRRVWITGTR NAEHGLDAAS NKTGPLSIFA
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.