Factsheet for Solyc06g075150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc03g121060.2.1
Solyc04g081240.2.1
Solyc06g075150.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc11g069190.1.1
Solyc11g069500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT2G28350.1	Solyc08g008380.2.1	AT1G34310.1	22096563
AT2G28350.1	Solyc08g082630.2.1	AT1G34310.1	22096563
AT2G28350.1	Solyc06g075150.2.1	AT2G28350.1	22096563
AT2G28350.1	Solyc11g069500.1.1	AT2G28350.1	22096563
AT2G28350.1	Solyc03g121060.2.1	AT3G16500.1	21734647
AT2G28350.1	Solyc01g096070.2.1	AT3G61830.1	22096563
AT2G28350.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062489	Potato	nucleus	91.51	90.83
Solyc11g069500.1.1	Tomato	nucleus	69.3	66.52
VIT_06s0004g02750.t01	Wine grape	nucleus	63.64	60.06
GSMUA_Achr4P18240_001	Banana	nucleus	53.8	59.47
GSMUA_Achr8P18930_001	Banana	nucleus	50.67	59.34
KRH22880	Soybean	nucleus	58.12	58.21
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.69	58.04
GSMUA_Achr5P18540_001	Banana	nucleus	44.71	57.8
GSMUA_Achr11P...	Banana	nucleus	45.9	56.93
GSMUA_Achr5P14630_001	Banana	nucleus	46.2	56.26
KRH26435	Soybean	nucleus	58.57	56.14
KRH29907	Soybean	nucleus	58.27	56.1
KRH25023	Soybean	nucleus	58.42	55.92
Solyc09g007810.2.1	Tomato	nucleus	57.82	55.91
GSMUA_Achr5P03960_001	Banana	nucleus	46.5	55.81
GSMUA_Achr11P...	Banana	nucleus	49.93	55.46
Zm00001d014013_P002	Maize	nucleus	53.06	55.28
HORVU3Hr1G081710.1	Barley	cytosol	8.49	54.29
EER94066	Sorghum	nucleus	55.74	54.28
Zm00001d032683_P001	Maize	nucleus	54.99	54.19
CDY15734	Canola	nucleus	53.8	53.09
TraesCS1B01G173700.1	Wheat	nucleus	54.4	52.82
TraesCS1D01G155100.1	Wheat	nucleus	54.1	52.76
TraesCS1A01G156600.1	Wheat	nucleus	54.1	52.76
TraesCS7B01G346700.1	Wheat	nucleus	54.55	52.74
Os06t0685700-01	Rice	nucleus	54.99	52.71
CDY04557	Canola	nucleus	53.65	52.55
HORVU1Hr1G041770.1	Barley	nucleus	53.8	52.47
TraesCS7D01G436800.1	Wheat	nucleus	54.25	52.37
Os04t0519700-01	Rice	nucleus	30.55	52.3
Os10t0479900-01	Rice	nucleus	54.4	52.29
HORVU7Hr1G101270.1	Barley	nucleus	53.95	51.94
TraesCS7A01G446900.1	Wheat	nucleus	54.25	51.93
EER88840	Sorghum	nucleus	54.69	51.76
Bra011955.1-P	Field mustard	nucleus	54.25	51.63
Os02t0628600-01	Rice	nucleus	52.31	51.54
AT2G28350.1	Thale cress	nucleus	53.2	51.52
Zm00001d000358_P001	Maize	nucleus	53.5	51.29
Zm00001d014507_P002	Maize	nucleus	54.25	50.21
EES05458	Sorghum	nucleus	51.71	49.01
HORVU5Hr1G024100.1	Barley	cytosol	11.03	49.01
Zm00001d017284_P001	Maize	nucleus	51.27	48.66
TraesCS6A01G222300.1	Wheat	nucleus	47.99	47.92
Zm00001d051172_P001	Maize	nucleus	49.63	46.84
TraesCS2D01G376600.1	Wheat	nucleus	48.14	45.24
TraesCS2B01G397300.1	Wheat	nucleus	47.69	45.2
TraesCS6B01G258800.1	Wheat	mitochondrion	49.93	44.85
HORVU2Hr1G089670.1	Barley	nucleus	46.94	44.37
HORVU6Hr1G058890.2	Barley	mitochondrion	49.63	43.87
Solyc11g013480.1.1	Tomato	nucleus	22.35	43.86
Solyc10g086130.1.1	Tomato	nucleus	41.13	43.74
TraesCS6D01G212700.1	Wheat	plastid	49.78	43.43
KXG36152	Sorghum	nucleus	40.54	41.03
KXG26729	Sorghum	nucleus, plastid	42.92	39.89
TraesCS2A01G380300.1	Wheat	nucleus	23.4	38.86
Zm00001d025871_P001	Maize	nucleus	32.79	37.41
HORVU7Hr1G021880.1	Barley	nucleus	11.18	33.94
HORVU2Hr1G089660.8	Barley	nucleus	12.37	25.54
Solyc02g077560.2.1	Tomato	nucleus	27.42	24.63
Solyc11g013470.1.1	Tomato	cytosol, nucleus, vacuole	9.99	19.76
Solyc05g056040.2.1	Tomato	nucleus	17.29	17.85

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	UniProt:K4C9N1	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc06g075150.2
EnsemblPlants:Solyc06g075150.2.1	UniParc:UPI000276698A	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4C9N1]

Coordinates

chr6:+:46630694..46633543

Molecular Weight (calculated)

74914.9 Da

IEP (calculated)

5.841

GRAVY (calculated)

-0.272

Length

671 amino acids

Sequence
(BLAST)

001: MEVVEEKCVD SLFWHVCTGS MVQIPPVNSK VFYFPQGYAE HTFTNVDFTV LARIPAMILC RVDAVKFLAD TETDEVYAKI RLIPVEDFED DSVVEETEKP
101: AFFAKTLTQS DANNGGGFSV PRYCAETIFP KLDFTADPPV QVVKAKDVHG VTWNFRHIYR GTPRRHLLTS GWSAFVNKKK LVAGDSVVFV KAENDELCVG
201: IRRVKRGGIG GPETQSGWKS TACSYGGFVT EDENSSTNGN LISYGERFRD KGKVSPDEVV RASCLAANGQ PFEIVYYPGA STPEYCVKAS SVRAAMSVQW
301: CSGMRFKMAF ETEDFSQISW FMGSISSVQV VDPIRWPHSL WRLLQVTWDE PDLLQNVKSV NPWLVELVSN MPDINLSHNS PPRKRLCLPQ EFPFDGQFPL
401: PSFSGNPLTS SSYSRYPSDS ITAGIQGARH VRFGVPLLDL HRSEKLQLGV LQPPVSQQAD ADSEIPIGTS KVQKESNENI SCLLTMGTSS QMEKADNVKT
501: PRFLLFGQPI LTEQQMSSVL STHAPPQVQT ERNSDWAQLK TERITPDWKC LSESLSSTFL WNKGYHAAEL GASTDHCKVF LDSEDVGRTL DLSVLGSYAE
601: LYKRLADMFE MERLDMVTRV LYLDATGASK QIGDEPFSDF IKTAKRLTIL KKSGNSATRK WLTDLPILNV V

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.