Factsheet for Solyc11g013480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071449	Potato	nucleus	89.18	84.49
KRH16622	Soybean	mitochondrion	18.13	46.97
GSMUA_Achr9P29480_001	Banana	nucleus	44.44	33.93
KRH18828	Soybean	nucleus	50.88	31.58
Bra003665.1-P	Field mustard	nucleus	48.25	30.22
CDX79239	Canola	nucleus	47.95	30.15
CDX68039	Canola	nucleus	47.95	30.09
KRH64757	Soybean	plastid	49.12	29.89
CDX88392	Canola	nucleus	45.32	29.25
Bra015651.1-P	Field mustard	nucleus	46.49	29.12
Zm00001d030803_P001	Maize	nucleus	28.07	28.24
AT1G77850.2	Thale cress	nucleus	48.54	27.85
Zm00001d026687_P001	Maize	nucleus	37.13	27.49
Zm00001d002929_P001	Maize	nucleus	40.35	26.9
Zm00001d026694_P001	Maize	nucleus	28.66	26.78
EES13156	Sorghum	nucleus	40.35	26.64
TraesCS2A01G567300.1	Wheat	nucleus	39.47	26.21
TraesCS2D01G577800.1	Wheat	nucleus	39.18	26.12
GSMUA_Achr10P...	Banana	nucleus	37.72	25.8
GSMUA_Achr6P18900_001	Banana	plastid	30.99	25.79
Os04t0690600-01	Rice	plastid	38.3	24.76
Solyc10g086130.1.1	Tomato	nucleus	44.74	24.25
HORVU7Hr1G108360.1	Barley	nucleus	23.68	23.96
Solyc11g069500.1.1	Tomato	nucleus	47.66	23.32
KRH16623	Soybean	nucleus	25.73	22.8
TraesCS7D01G463000.1	Wheat	nucleus	23.39	22.6
Solyc06g075150.2.1	Tomato	nucleus	43.86	22.35
Solyc09g007810.2.1	Tomato	nucleus	44.74	22.05
Zm00001d030801_P001	Maize	nucleus	28.66	21.97
TraesCS7A01G475700.1	Wheat	nucleus	22.51	20.75
TraesCS7A01G475600.1	Wheat	nucleus	22.51	20.59
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	20.18	19.88
Os07t0183700-00	Rice	mitochondrion	26.61	17.37
Solyc02g077560.2.1	Tomato	nucleus	32.75	14.99
Solyc05g056040.2.1	Tomato	nucleus	26.9	14.15
Os07t0183350-00	Rice	extracellular	22.22	9.97
HORVU2Hr1G125740.1	Barley	nucleus	9.65	8.48
Os07t0183100-00	Rice	nucleus	8.77	8.38
Solyc11g013470.1.1	Tomato	cytosol, nucleus, vacuole	8.19	8.26
Os07t0183200-01	Rice	nucleus	0.29	0.25

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4D6F2	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936
EnsemblPlantsGene:Solyc11g013480.1	EnsemblPlants:Solyc11g013480.1.1	UniParc:UPI000276A445	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4D6F2]

Coordinates

chr11:-:6508855..6511349

Molecular Weight (calculated)

38290.8 Da

IEP (calculated)

7.980

GRAVY (calculated)

-0.205

Length

342 amino acids

Sequence
(BLAST)

001: MQAPTVADRE VDPIVWRAIA GNSVKIPPVG TRVYYFPQGH AEHATFTSPA VMSPGMPAFI LCRVLSVRFL AESDTDEVYA RIFLHPISQS EVDEVTMREE
101: EVVEDEIVSF VKILTPSDAN NGGGFSVPRF CADSIYPRLD FEAEPPVQNL SIRDIKGVAW EFRHIYRGTP RRHLLTTGWS KFVNSKQLVA GDSAVFMRRT
201: ANNQLYVGVR RAIRRNDDSQ KWTSSFLMRE HINNGGSPDV SWGIRKGRMT MEAVAAVAEK AARGVPFEVS CYPRDAWAGF VVKAQEVQMA LNMPWTVGMR
301: VKMAVEAEDS SRTACYQGTV SSVILNESGP WRGSPWRMLQ II

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.