Factsheet for Zm00001d026687_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13156	Sorghum	nucleus	66.02	58.88
Zm00001d002929_P001	Maize	nucleus	64.07	57.7
Zm00001d030803_P001	Maize	nucleus	40.26	54.71
Zm00001d030801_P001	Maize	nucleus	48.7	50.45
Zm00001d026694_P001	Maize	nucleus	39.61	50.0
TraesCS2D01G577800.1	Wheat	nucleus	49.13	44.25
TraesCS2A01G567300.1	Wheat	nucleus	48.7	43.69
Os04t0690600-01	Rice	plastid	45.02	39.32
Solyc11g013480.1.1	Tomato	nucleus	27.49	37.13
PGSC0003DMT400071449	Potato	nucleus	26.84	34.35
KRH16622	Soybean	mitochondrion	9.74	34.09
Zm00001d003011_P001	Maize	nucleus	14.5	33.33
Zm00001d053166_P001	Maize	nucleus	10.61	33.11
GSMUA_Achr9P29480_001	Banana	nucleus	26.84	27.68
CDX88392	Canola	nucleus	30.3	26.42
Bra003665.1-P	Field mustard	nucleus	30.74	26.01
CDX68039	Canola	nucleus	30.52	25.87
Bra015651.1-P	Field mustard	nucleus	30.52	25.82
CDX79239	Canola	nucleus	30.09	25.55
KRH64757	Soybean	plastid	30.74	25.27
HORVU2Hr1G125740.1	Barley	nucleus	21.0	24.94
KRH18828	Soybean	nucleus	29.44	24.68
GSMUA_Achr6P18900_001	Banana	plastid	21.0	23.6
Zm00001d014013_P002	Maize	nucleus	32.68	23.45
AT1G77850.2	Thale cress	nucleus	30.09	23.32
Zm00001d025871_P001	Maize	nucleus	28.14	22.11
Zm00001d051172_P001	Maize	nucleus	33.77	21.94
Zm00001d017284_P001	Maize	nucleus	33.55	21.92
Zm00001d032683_P001	Maize	nucleus	32.25	21.88
GSMUA_Achr10P...	Banana	nucleus	23.38	21.6
Zm00001d000358_P001	Maize	nucleus	32.68	21.57
ATMG00940.1	Thale cress	cytosol	7.58	21.34
Zm00001d014507_P002	Maize	nucleus	33.33	21.24
KRH16623	Soybean	nucleus	16.88	20.21
Zm00001d006004_P001	Maize	nucleus	13.2	18.1
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	12.55	16.71
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	9.96	16.37
Zm00001d043431_P012	Maize	nucleus	22.94	15.32
Zm00001d012731_P010	Maize	nucleus	22.73	15.22
Zm00001d038698_P001	Maize	nucleus	22.29	15.15
Zm00001d043922_P001	Maize	nucleus	22.94	14.97
Zm00001d039006_P007	Maize	nucleus	24.03	14.45

Protein Annotations

EntrezGene:100283112	MapMan:15.5.5.1	Gene3D:2.40.330.10	ProteinID:ADG43165.1	ProteinID:AQK47452.1	InterPro:Auxin_resp
InterPro:B3_DNA-bd	UniProt:B6TEP4	EMBL:BT067850	InterPro:DNA-bd_pseudobarrel_sf	EMBL:EU963459	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EMBL:KJ727942	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF19	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000182D5A4
EnsemblPlantsGene:Zm00001d026687	EnsemblPlants:Zm00001d026687_P001	EnsemblPlants:Zm00001d026687_T001	SEG:seg	:	:

Description

ARF-transcription factor 31Auxin response factor 17

Coordinates

chr10:-:149949300..149951152

Molecular Weight (calculated)

50566.8 Da

IEP (calculated)

5.412

GRAVY (calculated)

-0.438

Length

462 amino acids

Sequence
(BLAST)

001: MEPQPPLPLA NGHGNSIVDR DVWLACAAPL SRLPTVGDDV YYFPDGHAEQ CPAHLPAPLP APHFFPCTVT DISLGADDKT DEVFAKISLR PGLAAASRPD
101: PGSSNSPPRE PLSYSIKELS QSDANGGGSF CVPRYCGDHV WPKVDFEADP PMQNLVMHDT TGKQWEFRHV YRAKQPRHVL TTGWSKFVNA KLLVAGDIIV
201: FMRRPNGDLI VGLRRMPRYA GTLHRPGTGG DAQDPDQPPP PPPRNALARV PPKDVMEAAR LAAEGRPFTV TYYPRKAAGE FVVPRNEVEG VLDTLWEPGS
301: HVLMQFAEAE DTRRTMWADG HVKAIHQKIW RALEIDWDVA SSAISAQLGR FVNAWQVQRI AYPSICGGLG DLCYPLPLME SESQVMAMIL EQMPPRTSAS
401: PPNNPPRPGP GQKVNTIMLF GATIHVVQSD TDDDGYEQLN RDPPPNAAGG GDDMDHDSAE NI

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.