Factsheet for Bra003665.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68039	Canola	nucleus	97.99	98.17
CDX79239	Canola	nucleus	95.6	95.96
Bra015651.1-P	Field mustard	nucleus	73.44	73.44
AT1G77850.2	Thale cress	nucleus	73.63	67.45
KRH16622	Soybean	mitochondrion	14.1	58.33
KRH18828	Soybean	nucleus	49.82	49.36
PGSC0003DMT400071449	Potato	nucleus	32.6	49.31
Solyc11g013480.1.1	Tomato	nucleus	30.22	48.25
KRH64757	Soybean	plastid	47.25	45.91
GSMUA_Achr9P29480_001	Banana	nucleus	37.55	45.76
KRH16623	Soybean	nucleus	31.5	44.56
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	25.27	39.77
GSMUA_Achr6P18900_001	Banana	plastid	29.85	39.66
TraesCS2D01G577800.1	Wheat	nucleus	34.62	36.84
TraesCS2A01G567300.1	Wheat	nucleus	34.62	36.7
EES13156	Sorghum	nucleus	32.42	34.17
GSMUA_Achr10P...	Banana	nucleus	31.14	34.0
Zm00001d002929_P001	Maize	nucleus	31.87	33.92
Bra029293.1-P	Field mustard	nucleus	14.65	32.92
Bra011162.1-P	Field mustard	nucleus	37.73	31.84
Zm00001d026687_P001	Maize	nucleus	26.01	30.74
Os04t0690600-01	Rice	plastid	29.67	30.62
Bra011955.1-P	Field mustard	nucleus	39.01	30.21
Zm00001d030803_P001	Maize	nucleus	18.5	29.71
Zm00001d026694_P001	Maize	nucleus	19.41	28.96
HORVU7Hr1G108360.1	Barley	nucleus	17.77	28.7
Zm00001d030801_P001	Maize	nucleus	23.08	28.25
TraesCS7D01G463000.1	Wheat	nucleus	17.58	27.12
Bra024109.1-P	Field mustard	nucleus	33.88	26.66
TraesCS7A01G475700.1	Wheat	nucleus	15.38	22.64
TraesCS7A01G475600.1	Wheat	nucleus	15.38	22.46
Bra005465.1-P	Field mustard	nucleus	24.54	22.15
Bra021885.1-P	Field mustard	nucleus	22.34	22.1
HORVU2Hr1G125740.1	Barley	nucleus	13.92	19.54
Bra015374.1-P	Field mustard	nucleus	14.29	18.1
Os07t0183700-00	Rice	mitochondrion	16.48	17.18
Os07t0183350-00	Rice	extracellular	17.4	12.47
Os07t0183100-00	Rice	nucleus	5.86	8.94
Os07t0183200-01	Rice	nucleus	0.92	1.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	ProteinID:AFD01313	ProteinID:AFD01313.1	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra003665	EnsemblPlants:Bra003665.1	EnsemblPlants:Bra003665.1-P	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979479	UniProt:M4CHI2	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000254146B	SEG:seg	:	:	:	:

Description

AT1G77850 (E=5e-120) ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor

Coordinates

chrA07:-:14344934..14346656

Molecular Weight (calculated)

59811.0 Da

IEP (calculated)

5.019

GRAVY (calculated)

-0.284

Length

546 amino acids

Sequence
(BLAST)

001: MSPPPSATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSFSTA APVPCVVSAV ELLADPITDE VFAHLALQPI SPEHFSPSNF
101: SGFGSDDDDD NNSNSNKNKV VTFAKILTPS DANNGGGFSV PRYCADSVFP PLDFHADPPV QKLFITDIHG VVWDFRHIYR GTPRRHLLTT GWSKFVNGKK
201: LIAGDSVVFM RKSVDEMFIG VRRAPISNHG DEYYGGGKKG FRRIGMGKLT AEAVSEAVNK AVQGYPFEVV YYPTAGWSDF VVRAEDVEVS MAGYWSPGTR
301: VKMAMETEDS SRVTWFQGVV SSTFQETGLW KQLQITWDEP EILQNLKRVN PWQVEVVANS SHLLAIYPPA KRLKPSSSAS GFLSGEGEML YSGRGQQAVD
401: PSPYLFSYTT FPAGMQGARH YEFGSFNSIG FIGENTPQLC TNNFFSPLPG LRKVSTEMVN YGSPLSDDLS PNSNTTNVSS GNELVGNRGH AVRVSSIQLF
501: GQIINVQELT ESGLAEGLYE EDGSKESSDN EVVNETQLSL TYAQGM

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.