Factsheet for Bra015374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029293.1-P	Field mustard	nucleus	29.23	51.85
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	16.24	24.91
AT1G43950.1	Thale cress	nucleus	11.6	22.52
Bra005465.1-P	Field mustard	nucleus	27.38	19.5
Bra021885.1-P	Field mustard	nucleus	22.27	17.39
Bra003665.1-P	Field mustard	nucleus	18.1	14.29
Bra015651.1-P	Field mustard	nucleus	18.1	14.29
Bra011162.1-P	Field mustard	nucleus	21.35	14.22
PGSC0003DMT400059999	Potato	nucleus	19.72	13.08
Bra024109.1-P	Field mustard	nucleus	20.88	12.97
Solyc05g056040.2.1	Tomato	nucleus	19.49	12.92
Bra011955.1-P	Field mustard	nucleus	20.88	12.77

Protein Annotations

Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:2.40.50.140	MapMan:35.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd
EnsemblPlantsGene:Bra015374	EnsemblPlants:Bra015374.1	EnsemblPlants:Bra015374.1-P	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR015300	UniProt:M4DFV1	InterPro:NA-bd_OB-fold	PFAM:PF02362	PFAM:PF06507
PANTHER:PTHR31384	PANTHER:PTHR31384:SF1	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF50249	UniParc:UPI0002543AE1
SEG:seg	:	:	:	:	:

Description

AT4G23980 (E=1e-069) ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor

Coordinates

chrA10:-:2221019..2223732

Molecular Weight (calculated)

47919.3 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.353

Length

431 amino acids

Sequence
(BLAST)

001: MKSSSESSVS GVSSAEPEVT VDEPMSPDPS PPESQRPKVH SFSKVLTASD TSTHGGFSVL RKHATECLSP LDMTQQTPTQ ELVAEDVHAY QWKFKHIFRG
101: WSTFVTAKRL VARDTFVFLR TSQFIISLNK YLEAMSNKFA VGIRFKMRFE GEDSPERRFS GTVVGVKDCS THWKDSNWRC LEVRWDEPAS ISRPDKVSPW
201: EIEAFVTSEN VPHSVMPKNK RPRHFSEVSA LDVGKTASNL WGSALAQSHE LAQSCITSQR NSPQQCALTL SSLSSSRVFL DLDVQPTRDY LTWLGSNSDV
301: TNRVNPDNVT KAETVSWFEC TTTIDDVVHG SAWYYISCGG CKTKVTKGPT MLMCKKCVKV EVAGVSEYLT KLSVYDNNDH GFFVLLGDAG REWTGKPASA
401: LVESYFEANE SVGVDHIVPV PQALIYTIGQ T

Best Arabidopsis Sequence Match ( AT2G46530.1 )
(BLAST)

001: MANVEADFRT SGSNDDELYT ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV TLKAEHETDE VYAQITLQPE
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V

Arabidopsis Description

ARF11Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.