Factsheet for Bra011162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001670.1-P
Bra021257.1-P
Bra022224.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30080.1	Bra001670.1-P	AT3G17600.1	21798944
AT4G30080.1	Bra021257.1-P	AT3G17600.1	21798944
AT4G30080.1	Bra022224.1-P	AT3G17600.1	21798944
AT4G30080.1	Bra025431.1-P	AT5G38420.1	21798944
AT4G30080.1	Bra028174.1-P	AT5G38420.1	21798944
AT4G30080.1	Bra028181.1-P	AT5G38420.1	21798944
AT4G30080.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43553	Canola	nucleus	93.66	99.18
CDX68620	Canola	nucleus	92.12	96.6
AT4G30080.1	Thale cress	nucleus	91.19	88.06
Bra024109.1-P	Field mustard	nucleus	83.93	78.24
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	11.13	64.29
GSMUA_Achr4P18240_001	Banana	nucleus	57.19	60.96
VIT_13s0019g04380.t01	Wine grape	nucleus	63.06	60.09
GSMUA_Achr8P18930_001	Banana	nucleus	53.17	60.03
GSMUA_Achr11P...	Banana	nucleus	49.3	58.96
GSMUA_Achr5P18540_001	Banana	nucleus	46.21	57.61
GSMUA_Achr5P14630_001	Banana	nucleus	48.84	57.35
GSMUA_Achr5P03960_001	Banana	nucleus	49.0	56.71
HORVU5Hr1G024100.1	Barley	cytosol	13.14	56.29
Zm00001d014013_P002	Maize	nucleus	55.64	55.9
GSMUA_Achr11P...	Banana	nucleus	52.09	55.79
Os06t0685700-01	Rice	nucleus	59.81	55.29
TraesCS7B01G346700.1	Wheat	nucleus	58.27	54.32
EER88840	Sorghum	nucleus	59.51	54.3
HORVU3Hr1G081710.1	Barley	cytosol	8.81	54.29
Os04t0519700-01	Rice	nucleus	32.77	54.08
TraesCS7D01G436800.1	Wheat	nucleus	57.81	53.81
KRG91907	Soybean	nucleus	49.15	53.63
EER94066	Sorghum	nucleus	57.03	53.56
HORVU7Hr1G101270.1	Barley	nucleus	57.5	53.37
TraesCS1A01G156600.1	Wheat	nucleus	56.72	53.34
TraesCS7A01G446900.1	Wheat	nucleus	57.65	53.21
TraesCS1D01G155100.1	Wheat	nucleus	56.57	53.2
TraesCS1B01G173700.1	Wheat	nucleus	56.72	53.11
KRH34867	Soybean	nucleus	50.23	53.1
HORVU1Hr1G041770.1	Barley	nucleus	56.41	53.05
Zm00001d032683_P001	Maize	nucleus	55.8	53.01
Zm00001d014507_P002	Maize	nucleus	58.58	52.28
Zm00001d000358_P001	Maize	nucleus	56.26	52.0
Os02t0628600-01	Rice	nucleus	54.56	51.84
Os10t0479900-01	Rice	nucleus	55.8	51.72
Bra011955.1-P	Field mustard	nucleus	55.64	51.06
EES05458	Sorghum	nucleus	54.4	49.72
Zm00001d017284_P001	Maize	nucleus	53.94	49.36
TraesCS6A01G222300.1	Wheat	nucleus	50.85	48.96
TraesCS2B01G397300.1	Wheat	nucleus	52.24	47.74
Zm00001d051172_P001	Maize	nucleus	52.4	47.68
TraesCS2D01G376600.1	Wheat	nucleus	52.24	47.34
HORVU2Hr1G089670.1	Barley	nucleus	51.47	46.9
TraesCS6B01G258800.1	Wheat	mitochondrion	52.86	45.78
HORVU6Hr1G058890.2	Barley	mitochondrion	53.17	45.32
TraesCS6D01G212700.1	Wheat	plastid	52.86	44.47
KXG36152	Sorghum	nucleus	44.2	43.14
KXG26729	Sorghum	nucleus, plastid	46.37	41.55
TraesCS2A01G380300.1	Wheat	nucleus	25.04	40.1
Zm00001d025871_P001	Maize	nucleus	34.93	38.44
Bra003665.1-P	Field mustard	nucleus	31.84	37.73
Bra029293.1-P	Field mustard	nucleus	14.06	37.45
Bra015651.1-P	Field mustard	nucleus	31.38	37.18
HORVU7Hr1G021880.1	Barley	nucleus	12.36	36.2
Bra005465.1-P	Field mustard	nucleus	24.73	26.45
Bra021885.1-P	Field mustard	nucleus	22.41	26.27
HORVU2Hr1G089660.8	Barley	nucleus	12.52	24.92
Bra015374.1-P	Field mustard	nucleus	14.22	21.35

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01311	ProteinID:AFD01311.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra011162	EnsemblPlants:Bra011162.1	EnsemblPlants:Bra011162.1-P	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4D8	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EMBL:JN979477	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000253581E
SEG:seg	:	:	:	:	:

Description

AT4G30080 (E=0.0) ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor

Coordinates

chrA01:+:3589431..3591875

Molecular Weight (calculated)

71526.9 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.423

Length

647 amino acids

Sequence
(BLAST)

001: MINVMNPMRS GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLKLIP LKDNDHEYRD
101: GEESNGLGSN NSEKTPSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD
201: SIVFMRAENG DLCVGIRRAK RGGIGNNGLE YSAGWNPIGG SYSSLLRDDE RRSSSSLADR KGKVTAESVV EAAKLAVSGR GFEVVYYPRA SSSEFCVKAL
301: DARAAMRIPW CSGMRFKMAF ETEDSSRISW FMGTVSAVSV SDPVRWPNSP WRLLQVAWDE PDLLQYVKRV NPWLVELVSN VHPIIPSFSP PRKKMRLPQH
401: PDYNTRISVP SFASNPLIRS SPLSSVLDNV PVGLQGARHN AHQYYGLSSS DLHHYYLNRP HPPPPSSTLS VPPPLGFRNI DSKNEKGFCF LTMGTSPCND
501: TESKKSHIVL FGKLILPEEQ KGSEKTQLSS GGSNQNCVAG SSSEEGSPCS NKAHDGLGLE TGHCKVFMES DDVGRTLDLS VLGSYEELGM KLSDMFGIQK
601: SEMLSSVLYR DASGAVKYPG NEPFSEFLKT ARRLTILSEQ GSESVVV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.