Factsheet for Bra015651.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88392	Canola	nucleus	93.77	96.6
Bra003665.1-P	Field mustard	nucleus	73.44	73.44
AT1G77850.2	Thale cress	nucleus	71.25	65.27
KRH16622	Soybean	mitochondrion	13.0	53.79
PGSC0003DMT400071449	Potato	nucleus	30.95	46.81
Solyc11g013480.1.1	Tomato	nucleus	29.12	46.49
KRH64757	Soybean	plastid	46.52	45.2
KRH18828	Soybean	nucleus	45.6	45.19
GSMUA_Achr9P29480_001	Banana	nucleus	34.8	42.41
KRH16623	Soybean	nucleus	29.49	41.71
GSMUA_Achr6P18900_001	Banana	plastid	28.57	37.96
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	23.63	37.18
TraesCS2D01G577800.1	Wheat	nucleus	33.88	36.06
TraesCS2A01G567300.1	Wheat	nucleus	33.7	35.73
GSMUA_Achr10P...	Banana	nucleus	30.95	33.8
EES13156	Sorghum	nucleus	32.05	33.78
Zm00001d002929_P001	Maize	nucleus	31.14	33.14
Bra029293.1-P	Field mustard	nucleus	14.65	32.92
Bra011162.1-P	Field mustard	nucleus	37.18	31.38
Zm00001d026687_P001	Maize	nucleus	25.82	30.52
Os04t0690600-01	Rice	plastid	29.49	30.43
Bra011955.1-P	Field mustard	nucleus	37.36	28.94
Zm00001d030803_P001	Maize	nucleus	17.58	28.24
Zm00001d026694_P001	Maize	nucleus	18.86	28.14
Zm00001d030801_P001	Maize	nucleus	22.34	27.35
HORVU7Hr1G108360.1	Barley	nucleus	16.85	27.22
Bra024109.1-P	Field mustard	nucleus	34.25	26.95
TraesCS7D01G463000.1	Wheat	nucleus	17.03	26.27
Bra005465.1-P	Field mustard	nucleus	24.73	22.31
TraesCS7A01G475700.1	Wheat	nucleus	15.02	22.1
TraesCS7A01G475600.1	Wheat	nucleus	15.02	21.93
Bra021885.1-P	Field mustard	nucleus	22.16	21.92
HORVU2Hr1G125740.1	Barley	nucleus	13.37	18.77
Bra015374.1-P	Field mustard	nucleus	14.29	18.1
Os07t0183700-00	Rice	mitochondrion	16.12	16.79
Os07t0183350-00	Rice	extracellular	17.77	12.73
Os07t0183100-00	Rice	nucleus	5.13	7.82
Os07t0183200-01	Rice	nucleus	0.92	1.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	ProteinID:AFD01314	ProteinID:AFD01314.1	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra015651	EnsemblPlants:Bra015651.1	EnsemblPlants:Bra015651.1-P	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	UniProt:H9B4E1	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979480	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0002535821	SEG:seg	:	:	:	:

Description

AT1G77850 (E=9e-210) ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor

Coordinates

chrA07:+:21544030..21546268

Molecular Weight (calculated)

59888.0 Da

IEP (calculated)

5.481

GRAVY (calculated)

-0.403

Length

546 amino acids

Sequence
(BLAST)

001: MSPPSAIADV HRVIDPKIWR ACAGASVKIP ALFSRVYYYP QGHVEHCCPS SSAVTASPIA CVVSSIDLLA DPITDEVFAH LTLHPAAAQD QFQFPPQSRF
101: EEEDESEKVV TFAKVLTASD ANNGGGFSVP RYCADSVFPP LDFQADPPVQ KLFITDVHGG VWDFRHIYRG TPRRHLLTTG WSKFVNSKKL ICGDSVVFMR
201: KSVHEMFIGV RRAPISNKSG GSSYYGDEYF PGGYYGVKKE DGGEKFRRVG MGKLTAEAVS EAIGKASRGL PFEVVYYPTA GWSEFVVRAE DVEASTNVYW
301: TPGTRVKMAM ETEDSSRITW FQGIVSATFQ ETWKQLQITW DEPEILQNLK RVNPWQVEAV TASSTQLHAT YPPPPKRSKY PHASSGVLSG EEGEMIYYGR
401: GQQTMDPIPY GYTYTTVPAG MQGARHYEFG SYNNSTGFIG ENAHPEFNFF SPLPGLGRVS TQMMSFGSPP SDELSPNSNT TNVSSGNDAA GNNRGISFQL
501: FGKVINVQEP AESGVAESSL CEEDGSKESS DNEVPNEAQL LGRGGR

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.