Factsheet for Zm00001d026694_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030803_P001	Maize	nucleus	42.08	45.29
Zm00001d026687_P001	Maize	nucleus	50.0	39.61
Zm00001d030801_P001	Maize	nucleus	46.99	38.56
Zm00001d002929_P001	Maize	nucleus	51.64	36.84
EES13156	Sorghum	nucleus	51.37	36.29
Zm00001d053166_P001	Maize	nucleus	12.84	31.76
KRH16622	Soybean	mitochondrion	10.66	29.55
Solyc11g013480.1.1	Tomato	nucleus	26.78	28.66
TraesCS2D01G577800.1	Wheat	nucleus	39.89	28.46
TraesCS2A01G567300.1	Wheat	nucleus	39.34	27.96
Os04t0690600-01	Rice	plastid	39.89	27.6
PGSC0003DMT400071449	Potato	nucleus	27.05	27.42
GSMUA_Achr9P29480_001	Banana	nucleus	28.69	23.44
Zm00001d003011_P001	Maize	nucleus	11.48	20.9
Bra003665.1-P	Field mustard	nucleus	28.96	19.41
CDX68039	Canola	nucleus	28.69	19.27
CDX88392	Canola	nucleus	27.87	19.25
KRH18828	Soybean	nucleus	28.96	19.24
GSMUA_Achr10P...	Banana	nucleus	26.23	19.2
CDX79239	Canola	nucleus	28.14	18.93
Bra015651.1-P	Field mustard	nucleus	28.14	18.86
KRH64757	Soybean	plastid	28.69	18.68
Zm00001d014013_P002	Maize	nucleus	31.97	18.17
GSMUA_Achr6P18900_001	Banana	plastid	19.67	17.52
Zm00001d025871_P001	Maize	nucleus	27.6	17.18
Zm00001d032683_P001	Maize	nucleus	31.42	16.89
AT1G77850.2	Thale cress	nucleus	27.32	16.78
Zm00001d051172_P001	Maize	nucleus	32.51	16.74
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	12.84	16.73
Zm00001d017284_P001	Maize	nucleus	31.97	16.55
Zm00001d006004_P001	Maize	nucleus	15.03	16.32
Zm00001d014507_P002	Maize	nucleus	30.87	15.59
Zm00001d000358_P001	Maize	nucleus	29.78	15.57
KRH16623	Soybean	nucleus	14.48	13.73
Zm00001d012731_P010	Maize	nucleus	24.32	12.9
Zm00001d043431_P012	Maize	nucleus	24.32	12.86
Zm00001d043922_P001	Maize	nucleus	24.04	12.43
Zm00001d038698_P001	Maize	nucleus	22.13	11.91
Zm00001d039006_P007	Maize	nucleus	24.86	11.85
ATMG00940.1	Thale cress	cytosol	4.64	10.37
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	9.29	9.8
HORVU2Hr1G125740.1	Barley	nucleus	10.38	9.77

Protein Annotations

EntrezGene:103642222	MapMan:15.5.5.1	Gene3D:2.40.330.10	ProteinID:AQK47481.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K7TTV6
PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF19	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0002215818	EnsemblPlantsGene:Zm00001d026694	EnsemblPlants:Zm00001d026694_P001	EnsemblPlants:Zm00001d026694_T001	SEG:seg	:

Description

ABI3-VP1-transcription factor 10Auxin response factor 17

Coordinates

chr10:+:150074342..150075529

Molecular Weight (calculated)

41067.5 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.581

Length

366 amino acids

Sequence
(BLAST)

001: MATEPALPQG HGDGDSIVDR DVWLACAVPF SRVPTVGAEV YYFPDGHAEQ HLLAPLPASH RFPCTCTVTD VSLGAEDRTD EVFAKISLRP GPAAASRPEP
101: GPGPGSSNST RQGLSYFVNE LLHRDTSTSG MFCIPRYCTE HIFPKLDLNA NPPEQDLVMR DTRGKPWQFH HIYVVKIRQH RLTAGWSEFV DAKLLVAGDT
201: IVFMRHPNGD LILGLRRKAT RTSWRPRASP PWAGPSRSPT SRDRPPWSSS SRTARWIARS PPAGNEARRL EDENKQRSVW VDGHVVKANR QNIWRMLEIH
301: WWGDSPASAS PPSRAMSRFV NVWQVQRVAW FLPRPYYWRV RKKPGPGHEH DIGGATNSCN AKPLSC

Best Arabidopsis Sequence Match ( AT2G28350.2 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRK

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.