CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002929_P001	Maize	nucleus	81.08	81.87
Zm00001d026687_P001	Maize	nucleus	58.88	66.02
TraesCS2D01G577800.1	Wheat	nucleus	56.18	56.73
Zm00001d030803_P001	Maize	nucleus	36.68	55.88
TraesCS2A01G567300.1	Wheat	nucleus	55.41	55.73
Zm00001d030801_P001	Maize	nucleus	44.59	51.79
Zm00001d026694_P001	Maize	nucleus	36.29	51.37
Os04t0690600-01	Rice	plastid	48.84	47.83
Solyc11g013480.1.1	Tomato	nucleus	26.64	40.35
PGSC0003DMT400071449	Potato	nucleus	27.41	39.34
KRH16622	Soybean	mitochondrion	9.46	37.12
GSMUA_Achr9P29480_001	Banana	nucleus	30.7	35.49
HORVU2Hr1G125740.1	Barley	nucleus	26.25	34.96
CDX88392	Canola	nucleus	33.4	32.64
CDX68039	Canola	nucleus	34.17	32.48
Bra003665.1-P	Field mustard	nucleus	34.17	32.42
CDX79239	Canola	nucleus	33.98	32.35
Bra015651.1-P	Field mustard	nucleus	33.78	32.05
KRH64757	Soybean	plastid	33.78	31.14
KRH18828	Soybean	nucleus	33.01	31.03
GSMUA_Achr6P18900_001	Banana	plastid	23.17	29.2
AT1G77850.2	Thale cress	nucleus	32.43	28.19
KRH16623	Soybean	nucleus	20.46	27.46
GSMUA_Achr10P...	Banana	nucleus	26.45	27.4
EES05458	Sorghum	nucleus	35.91	26.27
EER94066	Sorghum	nucleus	34.75	26.12
EER88840	Sorghum	nucleus	34.94	25.53
ATMG00940.1	Thale cress	cytosol	7.72	24.39
KXG26729	Sorghum	nucleus, plastid	33.4	23.96
KXG36152	Sorghum	nucleus	29.92	23.38
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	15.64	23.34
EES03412	Sorghum	nucleus	25.87	19.09
KXG33384	Sorghum	nucleus	23.94	18.1
KXG22343	Sorghum	nucleus	23.17	17.75
EES18676	Sorghum	nucleus	25.1	17.59

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	EntrezGene:8076516	InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5YB36
InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES13156	ProteinID:EES13156	ProteinID:EES13156.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF19	SMART:SM01019	EnsemblPlantsGene:SORBI_3006G278900	SUPFAM:SSF101936	UniParc:UPI0001A87675	RefSeq:XP_002448828.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60926659..60930407

Molecular Weight (calculated)

56287.8 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.305

Length

518 amino acids

Sequence
(BLAST)

001: MAPQPPLAPA DGIVDRDVWL ACAVPLSRLP TVGAEVYYFP HGHAEQCPAH LPAPIPAPHL FPCIVTNLTL GADDKTNEVF AKISLSPGPH HAPAAASSLV
101: GPDPTTTTKE SESDSPPHPQ PQELSYFTKE LTQSDANNGG GFSVPRYCAD HIFPTLDFDA DPPVQNLVMR DTRGNPWQFR HIYRGTPRRH LLTTGWSRFV
201: NAKLLVAGDI VVFMRRTNGD LIVGLRRTPR YPLVFPGADA NANANQDQQP PPRNARARVP PQDVMEAARL AAEGRPFTVT YFPRQAAGEF VVPRDEVERA
301: LATRWEPGTE VRMQVMEAED TRRTVWADGH VKALHQNIWR ALEIDWDDSS PLSLKLSRFV NAWQVQLVAY PPLPNTVRIC DPIAPLCPGD VSYPLIGPES
401: QAMAMILGSP IPAGMQGARH TGPCAAPSES SAMLTTQLLF PLTNTDFQMP PRTSPSASSE ILDPEGASPP NNSVSMRPAE LPVQVKSIQL FGATITPHVV
501: QSATNGDGMA DGNVGKDF

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.